Query= MSMg01no357_p06.b1 MSMg01no357_p06.b1 CHROMAT_FILE:
MSMg01no357_p06.b1 PHD_FILE: MSMg01no357_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:05 2005
(247 letters)
>mm_chr1_81604419_81605065
Length = 647
Score = 441 bits (228), Expect = e-128
Identities = 240/244 (98%), Gaps = 2/244 (0%)
Strand = Plus / Minus
Query: 5 gaattctgagct-gtcatctcaaagtactcatttgtttacatttgaattaagatattttg 63
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gaattctgagctggt-atctcaaagtactcatttgtttacatttgaattaagatattttg 350
Query: 64 agcagttgatactataagataatactgattctttttttaaaaatgtttatcaaaaggatg 123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 349 agcagttgatactataagataatactgattcttttttaaaaaatgtttatcaaaaggatg 290
Query: 124 agcaggcaaagggcataagaatttctgttaagattatttagaaagggaaaacattcactc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 289 agcaggcaaagggcataagaatttctgttaagattatttagaaagggaaaacattcgctc 230
Query: 184 atgaattctgcttttctgtccttatcacatgcatacacacacacacacacacacacacac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 atgaattctgcttttctgtccttatcacatgcatacacacacacacacacacacacacac 170
Query: 244 acac 247
||||
Sbjct: 169 acac 166
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no357_p06.g1 MSMg01no357_p06.g1 CHROMAT_FILE:
MSMg01no357_p06.g1 PHD_FILE: MSMg01no357_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:05 2005
(538 letters)
>mm_chr1_81407416_81408357
Length = 942
Score = 934 bits (483), Expect = 0.0
Identities = 513/527 (97%), Gaps = 8/527 (1%)
Strand = Plus / Plus
Query: 1 atgttgctcaaattacaaatataatgtgatttgttccaaggcttatgacccacaaaaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgttgctcaaattacaaatataatgtgatttgttccaaggcttatgacccacaaaaggc 260
Query: 61 taaaacaacagatatatctggtttttttt----aagcatcttccaaatctttaaaagtac 116
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 taaaacaacagatatatctggttttttttttttaagcatcttccaaatctttaaaagtac 320
Query: 117 tgaattgctcatactattttttcttaaataaaattctctactaacttattaaaaaaaata 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaattgctcatactattttttcttaaataaaattctctactaacttattaaaaaaaata 380
Query: 177 actgacctacagcaagattcttacacaggttatattagtatgtaattagtagaacaaatt 236
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 actgacctacagcaagattcttacacaggttatattagtatgcaattagtagaacaaatt 440
Query: 237 tcttaaactaactaaaaaaactatctcgcaagttttattttgtctgattccttttctctt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttaaactaactaaaaaaactatctcgcaagttttattttgtctgattccttttctctt 500
Query: 297 tttcatccccttgctcatctggtgaccctggctaagaatcttgggcatcctgtgggctcc 356
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 tctcatccccttgctcatctggtgaccctggctaagaatcttgggcatcctgtgggatcc 560
Query: 357 acatggtgcttggcacttgtgtcatgatcatgtgaaatctcagcctcactcctgagaaac 416
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 acatggtgcttggcacttgtgtcatgatcatgtgaaatctcagcctcagtcctgagaaac 620
Query: 417 agccttactttgaccccttggattctaatcagagccaaaattttagtgtgaaagtagata 476
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 agccttactttgaccccttggattctaatcagagccaaaattttactgtgaaagtagata 680
Query: 477 gatagaaagatanctagatagatagatagatagatagatagatagat 523
|||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 681 gatagatagata----gatagatagatagatagatagatagatagat 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 942
Length adjustment: 10
Effective length of query: 528
Effective length of database: 932
Effective search space: 492096
Effective search space used: 492096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
