BAC Information

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BAC

Clone NameMSMg01-358E20
Chromosome1 (Build37)
Map Location 83,403,378 - 83,403,796
singlet/doubletsinglet
Overlap gene4930544G21Rik
Upstream geneRhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, EG622958
Downstream gene5033414K04Rik, LOC100039638, Dner
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358E20.T7 (MSMg01no358_e20.b1)MSMg01-358E20.TJ (MSMg01no358_e20.g1)
ACCAG467991AG467992
length741757
length of high quality
(start - end)
112 (256 - 367)418 (66 - 483)
definitionCHROMAT_FILE: MSMg01no358_e20.b1 PHD_FILE: MSMg01no358_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:32 2005CHROMAT_FILE: MSMg01no358_e20.g1 PHD_FILE: MSMg01no358_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTGTCAGCATACGACTCCTATAGTTAGAGGATCCGCGGAAATCATACCA
TCTTTGGAGGTTCACTGTAACATAATATTGTGACAGGCCCTTTTTCCTTT
TCTTTTTCCTTCCTTCCTTCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCT
GCCTTCCTGCCTTCCTGCCTTCCTGCCTTCCTGCCTTCCTGCCTTCCTGC
CTTCCTGCCTTCCTGACTTCCTGCCTTCCTGCCTTCCTGCCTTCCTGCCT
TCCTGCCTTCCTGCCTTCCTGCCTTCCTGCCTTCCTGCCTTCCTGCCTTC
CTGCCTTCCTGCCTTCCTGCCTTCCTTTCACTTTTTCCCTTACAGGTCCT
TTGCTTATATATTATGGCTTCAGGTTTTATGTTTTCATTGGATTCCTGTA
TGTGTGAACATGCATGTCTTTGTGTTTCTCATGCTTTTTCTTTAACTCTT
TTCCTTCTGTTTATATATGCCCATACTGAATAAAATAAGATTTTCTTTTT
AACAAAGAATTCCTAAAAAATATGGTTGGAAACCAAACCCTTAAAGGATG
AAAAATCCCTCCAACCCCTAATCAAAAATATCTAAAAAAACCGATTTTTT
AAAAAAAAAAAAAAAGACATAGCTTCTAATAAAAAAATAAATAAATATAA
AAAATAAACCAAATAANACAAATACAAAACAAATAAATAATATCAACTAA
ATTAACAAAAAAAAATACAAATAAAAAACAAATATAAACAA
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGTACTCTATGACTTTTGTTCTTCTCCCTAAACAA
TCTCCGGGTTGAACCGAGTCTATCTCTCAGGTGCCCAACTGAGCAGGTAG
CTTTGAGCCCTTTGTGCTCTCTGCCCAGCAGGAAGCTGAGCATTCGCAGT
TCACACCTAGAGCTCCTAGCACTGTTGAATGCTGCAGCCTGGGCTGCCAT
GCTGAGATCCCACAGGCCCACCTTTCAACTCCACCGAGGCTCAGGGCTAA
TCTTTTAGGCTCTTACTTCCTATCTCCCCACCCGAACTCACCCCACCCCA
ACCAACCCAAAAAACTAAGGTAGTTTTCAGTTGACACTGTCAAGCACTGA
AATAAACAAGTTGAGCTAGAATTCTTGGGTTGCATAGGAACATAGGAAGA
CCCAATACTCTCAGGCTAAGGCTCACAGACAGTAGCCAAGATAGAGGGAG
AGCTGGGATAAGGCTGGGGGTACAGCAGGGTACATATTGGCCTTTCAAGG
ATCAGAGGCTTTCCTCTATATCTGCAAATGGTCGCGGTGGGGGGAAAAAA
AAATGTCCCCCCGGTTTCCATTCATTAACCCCCCCTGGAAATCTATAAAA
GGAAATTGGAGGGTTCATACCAAGGCCGGGAGCCCCCCTATAAGTGAGGT
CCCGCCCCCTGGTGTTNTGGGGAAAAGAAGAAAATCAGATCCCCCCCTTT
TTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_e20.g1 MSMg01no358_e20.g1 CHROMAT_FILE:
MSMg01no358_e20.g1 PHD_FILE: MSMg01no358_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:32 2005
         (418 letters)



>mm_chr1_83403178_83403996
          Length = 819

 Score =  741 bits (383), Expect = 0.0
 Identities = 410/419 (97%), Gaps = 1/419 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtactctatgacttttgttcttctccctaaacaatctccgggttgaaccgagtctatct 60
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 619 agtactctatgacttttgttcttctccctaaaaaatatccgggttgaaccgagtctatct 560

                                                                       
Query: 61  ctcaggtgcccaactgagcaggtagctttgagccctttgtgctctctgcccagcaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 559 ctcaggtgcccaactgagcaggtagctttgagccctttgtgctctctgcccagcaggaaa 500

                                                                       
Query: 121 ctgagcattcgcagttcacacctagagctcctagcactgttgaatgctgcagcctgggct 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 499 ctgagcattcgcagttcacacctagagctcctagtactgttgaatgctgcagcctgggct 440

                                                                       
Query: 181 gccatgctgagatcccacaggcccacctttcaactccaccgaggctcagggctaatcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gccatgctgagatcccacaggcccacctttcaactccaccgaggctcagggctaatcttt 380

                                                                       
Query: 241 taggctcttacttcctatctccccacccgaactcaccccaccccaaccaaccc-aaaaaa 299
           |||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 379 taggctcttacttcttatctccccaccccaactcaccccaccccaaccaaccccaaaaaa 320

                                                                       
Query: 300 ctaaggtagttttcagttgacactgtcaagcactgaaataaacaagttgagctagaattc 359
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctaaggtagttttcagctgacactgtcaagcactgaaataaacaagttgagctagaattc 260

                                                                      
Query: 360 ttgggttgcataggaacataggaagacccaatactctcaggctaaggctcacagacagt 418
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 259 ttgggttgcataggaacataggaagacccaatactcacaggctaaggctcacagacagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 819
Length adjustment: 9
Effective length of query: 409
Effective length of database: 810
Effective search space:   331290
Effective search space used:   331290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)