TTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTCTATCCTCTCGGGTATC
AGCACGCCTCCTTGCGCGTATTTCTAGTTCTCCGTACTCTATATCGCGAG
ATCCTCGCACTCCTCCCCGTCTCTCCCACTCTNTCTTTTTCTTCATCCAG
CTCGTCGCCTNCCCTCCTTAAAATAAATTTTTGACCGGGGCCCCGCCCTT
AAATTACGNNAAACTCCACCTTAATAGTTTTTCCGCAAGGGAATCCCGGC
CGGGNNAAAATTTCTTCCCACCCCTGGNAATGTAACATACCTTGGNNNAA
AATTGGGAACAAGGAAGGNAAAGCCCACCCTTGGAAAAAAAAAAATTGGT
TTCCAAAACCAATTCCCCTTTTTAAAATTTAATTCCCGGGGGGAAAAAAA
ATGGGCCCAAAAATTCCCAAAAAAACCCAAACCCCCCCCCTTTGAAAGTA
TTTCCCNAAACCCCTCCAACAACCCAGGTTCCAAGAAAAATTGGGCCCCT
AAAGAATTCCAAAAAAAATTTCCCCCCGGGGGGTTGGGGAACCCAAACCC
CCCGAGAAAATTGGGGCCTTTGTGGGGGCCCCCAAAAGGGGGGANATTTT
TGGTGTGGGGGCAAAAATAAAAAAGGGGAAAGGGGGAAAAAANNNNNTCC
TTTTCCCCTCCCCTTCCCCCCCCACNAAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAACGCCTAGAGAAAGTAGCAATTAGCTGTA
CTTAAGGTGACATCAGTAGTACTATAAAATATAGGTTATATTCAGGCACT
TCTATATGACAGTTCTGCTCATTGAGATTAATTCTGAAAATAAATTCTTT
TTTAAAAATACAGAAATATGATATTCTGAAGACTGTAACAGTAGTTGCTT
GTGATAGTGGTAACAGCTGATGTCTAGCAGCTACAGAATACTTAAATGGT
CAAAGAAATGTTACACAACAAGTGAACAATAGAGAGGGATAAGGTATGAG
AGAAGGATTCTTACCCACTAATATTCTAATTTAAATTATGATTTCAGGTT
TGACATGTGTAGATCATAAAATGTACATATATTTGAGTGAAAGGGAATAT
GCAAAAATGAACATATACATTAGAGAAGGCAATTTTGTTTCTTCTAATGG
TGGTCATAAATGTTAGGCAGCAATTGATATTGGACCTAGCAATAATGAAG
TGATATGTCATATGCCACATTGTATCAGAAAAATTTAAATGTATGAGTTA
GAATATACTTGAGTTTCATGTTCCTATGCTACTAGGCAAATCAGTGCAAT
ATTCTCCTGTGTTTTCTCAGCTTCTTTTCCCTGTTCTTAATTCCAATCAT
TTCTCAACTCAATTGAG

Query= MSMg01no358_j15.g1 MSMg01no358_j15.g1 CHROMAT_FILE:
MSMg01no358_j15.g1 PHD_FILE: MSMg01no358_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:55 2005
         (548 letters)



>mm_chr1_66778003_66778950
          Length = 948

 Score = 1060 bits (548), Expect = 0.0
 Identities = 548/548 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacgcctagagaaagtagcaattagctgtacttaaggtgacatcagtagtactataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aaaacgcctagagaaagtagcaattagctgtacttaaggtgacatcagtagtactataaa 689

                                                                       
Query: 61  atataggttatattcaggcacttctatatgacagttctgctcattgagattaattctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 atataggttatattcaggcacttctatatgacagttctgctcattgagattaattctgaa 629

                                                                       
Query: 121 aataaattcttttttaaaaatacagaaatatgatattctgaagactgtaacagtagttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aataaattcttttttaaaaatacagaaatatgatattctgaagactgtaacagtagttgc 569

                                                                       
Query: 181 ttgtgatagtggtaacagctgatgtctagcagctacagaatacttaaatggtcaaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ttgtgatagtggtaacagctgatgtctagcagctacagaatacttaaatggtcaaagaaa 509

                                                                       
Query: 241 tgttacacaacaagtgaacaatagagagggataaggtatgagagaaggattcttacccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgttacacaacaagtgaacaatagagagggataaggtatgagagaaggattcttacccac 449

                                                                       
Query: 301 taatattctaatttaaattatgatttcaggtttgacatgtgtagatcataaaatgtacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 taatattctaatttaaattatgatttcaggtttgacatgtgtagatcataaaatgtacat 389

                                                                       
Query: 361 atatttgagtgaaagggaatatgcaaaaatgaacatatacattagagaaggcaattttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atatttgagtgaaagggaatatgcaaaaatgaacatatacattagagaaggcaattttgt 329

                                                                       
Query: 421 ttcttctaatggtggtcataaatgttaggcagcaattgatattggacctagcaataatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttcttctaatggtggtcataaatgttaggcagcaattgatattggacctagcaataatga 269

                                                                       
Query: 481 agtgatatgtcatatgccacattgtatcagaaaaatttaaatgtatgagttagaatatac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agtgatatgtcatatgccacattgtatcagaaaaatttaaatgtatgagttagaatatac 209

                   
Query: 541 ttgagttt 548
           ||||||||
Sbjct: 208 ttgagttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)