BAC Information

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BAC

Clone NameMSMg01-359A20
Chromosome1 (Build37)
Map Location 105,706,826 - 105,707,211
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359A20.T7 (MSMg01no359_a20.b1)MSMg01-359A20.TJ (MSMg01no359_a20.g1)
ACCAG468560AG468561
length774790
length of high quality
(start - end)
510 (23 - 532)387 (53 - 439)
definitionCHROMAT_FILE: MSMg01no359_a20.b1 PHD_FILE: MSMg01no359_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:28 2005CHROMAT_FILE: MSMg01no359_a20.g1 PHD_FILE: MSMg01no359_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACCAACCTTCCTCCTGG
CTCTTCCACAGGGTTCCCAAGCACAGCCTAATATTTGGCTACAGTTCTAT
GCATTTGTTCCCACAAGCTAAAAGTGGAAGCCCCTCTGGTGAAGCTCACC
ACCCCACAGGTGACATATAGACTAGGAGCTGAGGTATGAGTATAGCAGAG
TATCATTATTAGGATATCTATTTATTTATTTATTTATTGTCAATTGTGTT
TGTTTCTCTGAGCCATCCTCTTACACTTTTTACAATGTCTGTTCAGGCAT
TGTTGCGTGTAGGCTCCCTCTTGTGGCTTAGGTCTCAAGTTACACCAGTT
ATTGCTTGGCCACTTCCACAGGCTGAGCCACTATTCACACATCTTGCATG
CAGGACAAGTATGGGTGAAGGTTTTGTAGCTGGATTGGTGTTCCAGTCCC
ACCACTGGAAGCCTTGCCTGATTACAAAGGATGGCTGATTCAGGCACCCT
ATCTTCTTTTATTAAGAGTCCTGGGTAAGTTCAACCTCATAGATTCCAGG
AATTTTACACTCCACTAGGGTTCAACATTGAACCTAAATGGCCCCCGCCC
TTCCCCTAACTTTTCCTTGGTACCTCTTCCCCAAAACCGATTTCCCCCAT
TACACCCCTATTAGGCCCTGAATCTTCCCCCATAACCGGGCTCGGTCATT
TTTCTTCGGGAGAGACTGGGTTCTTCTTTATTGCCTCCCTTATACCAATT
TTTTTGGGGTCCCTTGCGAGGATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCTGAATTTCTTTAAAATAACTATATTTTATAGAAATCTACAAAACTGT
AAGATATAAAATTTGAAGGCTGATGAGGATCAGGTACCATTTTGCAAAAT
AAGATGATCTAATTCAGTATTTTGAAACTCACTCAGCTTCTAATATTTTA
TATAACAATAGATGATATTAATTCTCTAGAGAAATCTCTTCAAAATGTGC
TCTCAAGTCATTGCATAGAAGTAAAAGATGTTAACCAATAAGCTAGAATG
GGGTTCTCAGACTCTACCTGAAAGAATTGTGACTTGCTGAAGGGGTGTTT
ATATCATTTGTTGACAAAAGTATTAAATAGCGTACTTTTAGTATTTTCAA
TTTGTTGTGTGCTAAGTATATTTGAATCATGTTGCGTGTGATAAGTCCGA
GCATGCTACTTCTGAGTGTATGCGTCATAAATTCTGGCTTGTTCTTATAG
GATATATTACCCTTTGGTAACACGTGATTATCTTGCTAAAACCCCAGTTA
CATTTTTCCGTTACTCTTTCTCTGCTATTTCACCTTACCTGTCTTCTAAT
CCCCTTTTATCCTGGCGTTGCACCATTAACCATTGGACGGCATCTTACTC
CATGTTCACCTTTCCGTCTTTATCATCTCCTCCTCTCCTCCTTCTTCGCC
TATATTATCTTACTTTCTTTCACTTCTTTCATATCCTCCATCTATTTTTT
CATTTACCTGCCTGATATCTTTATCCCTTTATTTCTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_a20.g1 MSMg01no359_a20.g1 CHROMAT_FILE:
MSMg01no359_a20.g1 PHD_FILE: MSMg01no359_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:28 2005
         (387 letters)



>mm_chr1_105706626_105707411
          Length = 786

 Score =  687 bits (355), Expect = 0.0
 Identities = 379/387 (97%), Gaps = 1/387 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaatttctttaaaataactatattttatagaaatctacaaaactgtaagatataaaat 60
           ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 201 ctgaatttctttaaaataactatattttatagaaatctaaaaaactgcaagatataaaat 260

                                                                       
Query: 61  ttgaaggctgatgaggatcaggtaccattttgcaaaataagatgatctaattcagtattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaaggctgatgaggatcaggtaccattttgcaaaataagatgatctaattcagtattt 320

                                                                       
Query: 121 tgaaactcactcagcttctaatattttatataacaatagatgatattaattctctagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaactcactcagcttctaatattttatataacaatagatgatattaattctctagaga 380

                                                                       
Query: 181 aatctcttcaaaatgtgctctcaagtcattgcatagaagtaaaagatgttaaccaataag 240
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 catctcttcaaaatgtgctctcaagtcattgcatagaagtaaaagatgttagccaataag 440

                                                                       
Query: 241 ctagaatggggttctcagactctacctgaaagaattgtgacttgctgaaggggtgtttat 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ctagaatggggttctcagactctacctgaaagaattgtgacttgttgaaggggtgtttat 500

                                                                       
Query: 301 atcatttgttgacaaaagtattaaatagcgtacttttagtattttcaatttgttgtgtgc 360
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || 
Sbjct: 501 atcatttgttgacaaaagtattaaatagtgtacttttagtattttcaatttgttgtatg- 559

                                      
Query: 361 taagtatatttgaatcatgttgcgtgt 387
           |||||||||||||||||||||||||||
Sbjct: 560 taagtatatttgaatcatgttgcgtgt 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 786
Length adjustment: 9
Effective length of query: 378
Effective length of database: 777
Effective search space:   293706
Effective search space used:   293706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)