BAC Information

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BAC

Clone NameMSMg01-359A24
Chromosome1 (Build37)
Map Location 68,564,915 - 68,733,942
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneKif22-ps
Downstream geneLOC667842, EG241084, Ikzf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359A24.T7 (MSMg01no359_a24.b1)MSMg01-359A24.TJ (MSMg01no359_a24.g1)
ACCAG468568AG468569
length758774
length of high quality
(start - end)		454 (22 - 475)292 (58 - 349)
definitionCHROMAT_FILE: MSMg01no359_a24.b1 PHD_FILE: MSMg01no359_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:29 2005CHROMAT_FILE: MSMg01no359_a24.g1 PHD_FILE: MSMg01no359_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,733,511 - 68,733,942)(68,564,915 - 68,565,206)
sequence
ATACGACTCACTATTTCGAGAGGATCCGCGGAATTCTTATTGTTACTATT
TCTCAGGTTGAAACACCAGGGATAAATATAATTTGAGAGCAATGATGATA
ATAGCTTGAGCATAATTAATTTTTGTCATAGAAAACCAAAGTCTTAGGCA
TGCTTGTATCATAGAAAGAAGTATAGAATTACAAGTTGACTCTTAGTTTT
GAAAAAAATTAGATATTTAAAGAATAGTAATAATGTATACAGAGATGGAC
TTGTAATAAATATTATAGGATATTTAAATTAAATTAAAAGTGAGAGGACC
TATGAAAACTTTAGCTTCAACCAAAAACATAAAAAGTCACTCTATTTCAC
ATATTTATATATTTTGTCCAGTTTCTGTGAATTTAAGGTTAATTTGTCTA
TATGATGAGAAATAGAGAAGGGGAGTAATTTGTTGGAAAACTATTCTTAC
CCAACTCCTCAGAAATGATCTTCAAAGACTAGAAGGAAAACTACTGGCCA
AAAATATAAAGTTTGTTTCTGAACTGATATAAATGTTCCATTAAACTATT
TATTTGGATCTATTATAATATGCCAGTACCACACATTGTTGGTGGATAGG
AATTGGAAAACAAAGAAGTATGAATTCTCCTACATTTCCCCACTGAGGCC
GCTGGCCTCCTGGAATTCCCCCTGAAATTTAAAAAAAAACGGGCCGCCCA
CAATAAAGAACCCTTTTGAAATTGGGGTGGGGATTTCCCTTGGAAAGGTA
AAAATTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAATTGACGTAAGCAGCAACACAAACATGCTAGGTTTTGTGTGT
GTGTGTGTGTGGTCACATGATTGGCAACTAATAATAAGTAGTTTAGAAAA
CTATATTAAGTACAAAAGCATTGTTTTGTTTGCTGAACATATTAGGATAT
AGTAGATAGTTTTTACTCAACCCCTATATTGTCCACTGAGTCAATACCTT
TGGGAAGTATAATCAAAGTTTCTTTGCAAATACTCTTTTTATTACTAAAA
TTAAATTGTATGTGTCATCAATCCTAGGAATATGAAGAATATCAGAGAAT
TCACATTAGCATCATGTTATGCAATGGAATGCTGGGAGGTTGTACATTTG
ATTCTAAGCCTTATATTGCTCACAGTATTATATAATCCGGCACTTTCCTA
ACACATACATAAAACTTTTGCCTAACATTAACACTTTTCCTGGTATATTT
AATCCTTGCATTGCAATCTACTTTGTTTTATACTGCATCCCTAAGTTTTC
TCACCATCTCAAGGAATTTCTTTTTCCCCTATCCCCCTTTCCTGCCGTAT
TCCGATACGCTGCTGACATTTCGTTTCAAACACTGCTTCCGTCCTTCCCC
CCGTCTCCTCTTTTATTCTTCTCTTCCTCCTTTTTCACCTTCTTTTTACT
ACCCTTTTTTCCCTTTGTAATACCACTTTCTTTTCTTCTACTTCCTCCTA
CTTTTCATCCCCCCGCTTTTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_a24.b1 MSMg01no359_a24.b1 CHROMAT_FILE:
MSMg01no359_a24.b1 PHD_FILE: MSMg01no359_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:29 2005
         (454 letters)



>mm_chr1_68733511_68734364
          Length = 854

 Score =  828 bits (428), Expect = 0.0
 Identities = 431/432 (99%)
 Strand = Plus / Minus

                                                                       
Query: 10  gaattcttattgttactatttctcaggttgaaacaccagggataaatataatttgagagc 69
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gaattcttattgctactatttctcaggttgaaacaccagggataaatataatttgagagc 373

                                                                       
Query: 70  aatgatgataatagcttgagcataattaatttttgtcatagaaaaccaaagtcttaggca 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aatgatgataatagcttgagcataattaatttttgtcatagaaaaccaaagtcttaggca 313

                                                                       
Query: 130 tgcttgtatcatagaaagaagtatagaattacaagttgactcttagttttgaaaaaaatt 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgcttgtatcatagaaagaagtatagaattacaagttgactcttagttttgaaaaaaatt 253

                                                                       
Query: 190 agatatttaaagaatagtaataatgtatacagagatggacttgtaataaatattatagga 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agatatttaaagaatagtaataatgtatacagagatggacttgtaataaatattatagga 193

                                                                       
Query: 250 tatttaaattaaattaaaagtgagaggacctatgaaaactttagcttcaaccaaaaacat 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tatttaaattaaattaaaagtgagaggacctatgaaaactttagcttcaaccaaaaacat 133

                                                                       
Query: 310 aaaaagtcactctatttcacatatttatatattttgtccagtttctgtgaatttaaggtt 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 aaaaagtcactctatttcacatatttatatattttgtccagtttctgtgaatttaaggtt 73

                                                                       
Query: 370 aatttgtctatatgatgagaaatagagaaggggagtaatttgttggaaaactattcttac 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  aatttgtctatatgatgagaaatagagaaggggagtaatttgttggaaaactattcttac 13

                       
Query: 430 ccaactcctcag 441
           ||||||||||||
Sbjct: 12  ccaactcctcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_a24.g1 MSMg01no359_a24.g1 CHROMAT_FILE:
MSMg01no359_a24.g1 PHD_FILE: MSMg01no359_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:29 2005
         (292 letters)



>mm_chr1_68564715_68565406
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattgacgtaagcagcaacacaaacatgctaggttttgtgtgtgtgtgtgtgtggtcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattgacgtaagcagcaacacaaacatgctaggttttgtgtgtgtgtgtgtgtggtcaca 260

                                                                       
Query: 61  tgattggcaactaataataagtagtttagaaaactatattaagtacaaaagcattgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgattggcaactaataataagtagtttagaaaactatattaagtacaaaagcattgtttt 320

                                                                       
Query: 121 gtttgctgaacatattaggatatagtagatagtttttactcaacccctatattgtccact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttgctgaacatattaggatatagtagatagtttttactcaacccctatattgtccact 380

                                                                       
Query: 181 gagtcaatacctttgggaagtataatcaaagtttctttgcaaatactctttttattacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtcaatacctttgggaagtataatcaaagtttctttgcaaatactctttttattacta 440

                                                               
Query: 241 aaattaaattgtatgtgtcatcaatcctaggaatatgaagaatatcagagaa 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattaaattgtatgtgtcatcaatcctaggaatatgaagaatatcagagaa 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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