Query= MSMg01no359_h12.b1 MSMg01no359_h12.b1 CHROMAT_FILE:
MSMg01no359_h12.b1 PHD_FILE: MSMg01no359_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:58 2005
(165 letters)
>mm_chr1_133338337_133338905
Length = 569
Score = 223 bits (115), Expect = 6e-63
Identities = 124/129 (96%), Gaps = 4/129 (3%)
Strand = Plus / Minus
Query: 5 gaattctttatggtgtctatttggagccatttccct----gttactagaaaggaactcaa 60
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 311 gaattctttatggtgtctatttggagccatttccctgttagttagtagaaaggaactcaa 252
Query: 61 tttcaaaagaatacactgtaccagttggtggagttaaagacattcaagtgtgtgtgtgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttcaaaagaatacactgtaccagttggtggagttaaagacattcaagtgtgtgtgtgtg 192
Query: 121 tgtgtgtgt 129
|||||||||
Sbjct: 191 tgtgtgtgt 183
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 569
Length adjustment: 8
Effective length of query: 157
Effective length of database: 561
Effective search space: 88077
Effective search space used: 88077
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no359_h12.g1 MSMg01no359_h12.g1 CHROMAT_FILE:
MSMg01no359_h12.g1 PHD_FILE: MSMg01no359_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:58 2005
(519 letters)
>mm_chr1_133195970_133196888
Length = 919
Score = 973 bits (503), Expect = 0.0
Identities = 515/519 (99%)
Strand = Plus / Plus
Query: 1 tcttgttacacctacttctctcttaaagatcattctgattcttctcacaccatgatttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgttacacctacttctctcttaaagatcattctgattcttctcacaccatgatttaa 260
Query: 61 acagtaagtcctatctctccctccttcaaaagctagctccagattgcaggatttctagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtaagtcctatctctccctccttcaaaagctagctccagattgcaggatttctagca 320
Query: 121 aggcaggggtacaagcaaaacttgtagactgtgccattttcttcttctgcccataaaatt 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcaggggtgcaagcaaaacttgtagactgtgccattttcttcttctgcccataaaatt 380
Query: 181 ctgagggcccttgtcaactgctgagacttccagagaccaagtgatccagaaacggaggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagggcccttgtcaactgctgagacttccagagaccaagtgatccagaaacggaggtg 440
Query: 241 tggagcggttggacgccgggaaaatgtgctggctggacagactctaataaatcacatgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggagcggttggacgccgggaaaatgtgctggctggacagactctaataaatcacatgta 500
Query: 301 ctctagaggggtttgaggatgacagctgagcattccacccctggatgcacactcacgggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctagaggggtttgaggatgacagctgagcattccacccctggatgcacactcacgggc 560
Query: 361 tgttcagcacacacaaatctgtactttggaaggggtcacattttccagttggcaggcatg 420
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgcggcacacacaaatctgtactttggaaggggtcacattttccagttggcaggcatg 620
Query: 421 caagcgtgtggtttctgtgtcctcattcccacccccctcacttggcttctgttgagttct 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caagtgtgtggtttctgtgtcctcattcccacccccctcacttggcttctgttgagttct 680
Query: 481 tggcacccagtgtctctattccccaggcttgatgttttt 519
|||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggcacccagtgtctctattccccaggcttgatgttttt 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
