BAC Information

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BAC

Clone NameMSMg01-359L16
Chromosome1 (Build37)
Map Location 170,892,671 - 170,892,934
singlet/doubletsinglet
Overlap genenone
Upstream genePbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359L16.T7 (MSMg01no359_l16.b1)MSMg01-359L16.TJ (MSMg01no359_l16.g1)
ACCAG469075AG469076
length774789
length of high quality
(start - end)		357 (27 - 383)264 (58 - 321)
definitionCHROMAT_FILE: MSMg01no359_l16.b1 PHD_FILE: MSMg01no359_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:16 2005CHROMAT_FILE: MSMg01no359_l16.g1 PHD_FILE: MSMg01no359_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTCAGTTCTG
AGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTG
AGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGAC
AAACCCAGTTTTTAAAACTACGTATCTAGGGCAGAGAGAGATGGATCAAT
GGTTAAAGGCACTGATTGTTCATCAAGAGATCCTGAGTTCAATTCTCAGC
ACACACATGGTGGCTCAGAACCATCTGTATTGGGATCTGATTCCCTCTTC
TGATGTGTGTGAAGACAGAGCACTCATATACATTAAAAACAAACAAACAA
AGAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTCGCTTTCCCCCCCCCC
CCCCTTTTTTTTTCCTTTTTTTTTCTCCCTTTCTCCCTTTCCCCTTTTCC
CTCCTTTTTTCCCTTTTTTTCCTCCCTTTTTCTTTCCTTTTTTTCCCCCC
CCTTCCCTTTTTTTTTTCTTTCCTTTTCAATCCCATATACCGTTTTCCAT
CACCTTCTTTTTCCCTCCCACCTCCCCTATTTCCCCTTATCCCCTCCTTA
TCCTCTTTCTATTATTTTCCTTTTTTCCTTTTTATTACTACCCCCCCCTC
TTTTTACTTATTTATTTCACCTACACCCTTTTCTCCCACCTTTATTCTTC
CCCCCTTTCGTTCTTTATTTTTATTTACCGCTTTTTTTTATCCGCTCTCC
TCTTCTTTTCTCCTTTTCCTACCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTTAAGATTTATAGATATTTCTTCCTCCATTTATGATAGGAT
GTTTTATGACTGTGAATATATAGAATTCATCTTGTTATTCAAGGAGGCAG
ATCAACTATATCAACGTATATATGTTCAGGCTTCTGAAATTCTAAGGAGA
GTGCTGGCCAAACAACCTCTACCATTCCCAAGTTTAGTTTACCTTATTCC
ATTTAAATGATTATCTAGATATTCCATATACAGCTTTCTTGTGGTGTGAA
TATATTTTTTGGGGATATTTGTGTTTNTTCCTTCTTTTTTTTCTTTTTCT
TTTTCCCTTTCCCTTTTTTTTCTTCCCCCCTCTTTTCTTCCCCCTCCTTC
CCTTTTTCCCTTTCTTCCTCTTTTTTTTTTCTCTTATCTTCCCTTTTCCC
CCTCTTTTTTTTTTTCTTTTTCCCTTTTTTCTCTTCTCCCCTCCCCCCAC
CCCCTTTCCTTTTCCATATTCCTTCTCCTTTCTCTCCTTTTTTCCCCTTC
TCTTTTCCCTTTCCTTCTCTTTTTTCCTTTTTTTTTTCCCCCTCTCTTCT
TTTTTTTTTCCCCTTTCTTTTCCTTCCTTTTTTTTTTTTTATTCCCCTTT
CCTCCCCCTTCTCTTATACTTCCTTTTCCCCCCTCCCCCTTTCTTTTTTT
TCTCTCTATTTCGTATTTGTCATCTTTTTTTTCTCCTGTTCCCCCGTCTT
CTTTCTCCTTCTCCCTCCCCCTTTTTTTCTCCCTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_l16.g1 MSMg01no359_l16.g1 CHROMAT_FILE:
MSMg01no359_l16.g1 PHD_FILE: MSMg01no359_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:17 2005
         (264 letters)



>mm_chr1_170892471_170893134
          Length = 664

 Score =  511 bits (264), Expect = e-149
 Identities = 264/264 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttaagatttatagatatttcttcctccatttatgataggatgttttatgactgtgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaagatttatagatatttcttcctccatttatgataggatgttttatgactgtgaat 260

                                                                       
Query: 61  atatagaattcatcttgttattcaaggaggcagatcaactatatcaacgtatatatgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatagaattcatcttgttattcaaggaggcagatcaactatatcaacgtatatatgttc 320

                                                                       
Query: 121 aggcttctgaaattctaaggagagtgctggccaaacaacctctaccattcccaagtttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcttctgaaattctaaggagagtgctggccaaacaacctctaccattcccaagtttag 380

                                                                       
Query: 181 tttaccttattccatttaaatgattatctagatattccatatacagctttcttgtggtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaccttattccatttaaatgattatctagatattccatatacagctttcttgtggtgt 440

                                   
Query: 241 gaatatattttttggggatatttg 264
           ||||||||||||||||||||||||
Sbjct: 441 gaatatattttttggggatatttg 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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