BAC Information

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BAC

Clone NameMSMg01-360A19
Chromosome1 (Build37)
Map Location 160,640,498 - 160,641,013
singlet/doubletsinglet
Overlap genenone
Upstream gene6430517E21Rik, Astn1
Downstream genePappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360A19.T7 (MSMg01no360_a19.b1)MSMg01-360A19.TJ (MSMg01no360_a19.g1)
ACCAG469318AG469319
length7551,096
length of high quality
(start - end)		524 (68 - 591)---
definitionCHROMAT_FILE: MSMg01no360_a19.b1 PHD_FILE: MSMg01no360_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:42 2005CHROMAT_FILE: MSMg01no360_a19.g1 PHD_FILE: MSMg01no360_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAATCCGCGGAA
TTCTCTGGTCTTGCCAGACACAGTTGGAAAGGCTGGGTGGATTGCTCAGA
CCACCTTCCAGACACTTGGGAAGGCAAGAAGAAAAGGTGGCTGGAAACAT
AACCTTGGACTGTGGGAAAGAGGTTTGTGGTTGGAAATAAGCATTGTATA
ATAAATGGAATGATTCCTTGGCATTTTCTGCAATAATTTTCAAAGTGCCT
TCCTGTGATTTCTGGCTATCTGTGGGTGAGGGGGATTTCACCTTTGCTGT
TCTATGAGTGAGGAAACTGATTGTATGGAGAGACTCTTAGAAATTGGTAT
ATGTAGTAAGCTTCAGGTTGCACAAGACTCCAGATTTTGTTTTGTTTAGT
TTTGTTTTGTTCTTTGCTCTTAAATGGAATGTGTTTTCTGTTATACTATA
TGTAACCCAGTAGACCCAAGAGTGAACCCAGACCCTACTACAATGAGAAA
GGTCACAGCTTTTCATCTATTTGTGTTTGAAGGTAAACACACATTTCCCT
ATGGTTTTCTTAGTCTTTTTTTCTCTCCTCCTACTCTCCATGTTAAATGG
GAGGGAATCCTTCTTGAGCCCCAGCCCTCTCATATGCCAGGCCCTGAGTA
TAAGCAGATGCCCTTGAATATGCCAGTTAAGACAGCTGGACAAAAACGTT
TTGGAAGGTTGCATTCCTCTTAAAAAAGTCCCCCAAGGAAAGGCTTGTTT
TCTTT

ATACCTTACAGCGCATAACTCCGAATGGCCCGTCTTGGTTCGCCTCACAT
TTATGCCGATACTCCTATTAAGCGATCTCCCGCGAATTGCCCTGCGTTGT
ACTGACGCACAACATCGATGCACGACTTGTGGCGTGTACCTCGAGTTTGT
CTGTTACCCTTTTACCTTGACCTTTTCATATGTACGTTCTGCACTTGCCC
CAGATACGCATCGAGATCACCAACAACCGTACAGGTTTACCTTGTATACT
CCGTTTTGTAGATTCTCCATGTATATGCTTCTCCTCTCCTTTGCATACAC
TTTTTATCCAACAACGGATTAATAACTACCGAATAATAGAATCTATAAGT
TAATTAGTTTACTAAAGCGATTGTAAAGATTACGTACTCTAGGACCGAAA
TTAAAAATGGAACGATTATACCATATATATAGCAATATACCGATATTATA
ATACAAATGCTAAAACATTCAGAACAATAGTACTGCCTGTATCTTGTTTG
ATCACCCCACTCTTTTTGCCAGCGCTCTATTATTTATCGCGTTCTTAATT
ATGTGTTCGTATCATGCTACATTTTATCACACGACATATTAGACGTACGT
TTTACGTCCGCGCTTATATTCTCGCCGTCGTCCCCGCGTTACAAACTTTA
TTACCGAATATGTTACGTTTCGCTATATATTTTCGCGCATTCACACTATT
ATGCATGAAAGAATACATAATATATAAGACATATAATCATGCAAATACTT
ACCATTATACTATTACCAATATTACTGACACAACAACATGTACAATCTCC
TACTCGCTATTCTAGAATACACGTTCAGAAACACTCGCTCTCTATCCGTC
GCTGACCACAATTTTACTTCTTATACATTCACATCCTTTCGCTATTTATC
CCTGCCCGTATATCCGCACTATTATCGATCTTGTCGATGACGAGCCATCG
TCATTTGTGTATCCCGCCAGTATTATCCGAGGCCTTATATTATCCCGACC
ATATTGCGTAGTCGCCTTACTCGTATTCGCTTCGAACAGCCGCTTATGCT
TACGTTGTGCCCTTTATATCCGCGCGCGGTATGTCGCGCTTTCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_a19.b1 MSMg01no360_a19.b1 CHROMAT_FILE:
MSMg01no360_a19.b1 PHD_FILE: MSMg01no360_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:42 2005
         (524 letters)



>mm_chr1_160640498_160641420
          Length = 923

 Score =  977 bits (505), Expect = 0.0
 Identities = 514/517 (99%), Gaps = 1/517 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacagttggaaaggctgggtggattgctcagaccaccttccagacacttgggaaggcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 acacagttggaaaggctgggtggattgctcagaccaccttccagacacttgggaaggcaa 457

                                                                       
Query: 61  gaagaaaaggtggctggaaacataaccttggactgtgggaaagaggtttgtggttggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaagaaaaggtggctggaaacataaccttggactgtgggaaagaggtttgtggttggaaa 397

                                                                       
Query: 121 taagcattgtataataaatggaatgattccttggcattttctgcaataattttcaaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 taagcattgtataataaatggaatgattccttggcattttctgcaataattttcaaagtg 337

                                                                       
Query: 181 ccttcctgtgatttctggctatctgtgggtgagggggatttcacctttgctgttctatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ccttcctgtgatttctggctatctgtgggtgagggggatttcacctttgctgttctatga 277

                                                                       
Query: 241 gtgaggaaactgattgtatggagagactcttagaaattggtatatgtagtaagcttcagg 300
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gtgaggaaactgagtg-atggagagactcttagaaattggtatatgtagtaagcttcagg 218

                                                                       
Query: 301 ttgcacaagactccagattttgttttgtttagttttgttttgttctttgctcttaaatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttgcacaagactccagattttgttttgtttagttttgttttgttctttgctcttaaatgg 158

                                                                       
Query: 361 aatgtgttttctgttatactatatgtaacccagtagacccaagagtgaacccagacccta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 aatgtgttttctgttatactatatgtaacccagtagacccaagagtgaacccagacccta 98

                                                                       
Query: 421 ctacaatgagaaaggtcacagcttttcatctatttgtgtttgaaggtaaacacacatttc 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  ctgcaatgagaaaggtcacagcttttcatctatttgtgtttgaaggtaaacacacatttc 38

                                                
Query: 481 cctatggttttcttagtctttttttctctcctcctac 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  cctatggttttcttagtctttttttctctcctcctac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 923
Length adjustment: 10
Effective length of query: 514
Effective length of database: 913
Effective search space:   469282
Effective search space used:   469282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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