Query= MSMg01no360_c18.b1 MSMg01no360_c18.b1 CHROMAT_FILE:
MSMg01no360_c18.b1 PHD_FILE: MSMg01no360_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:51 2005
(496 letters)
>mm_chr1_33209251_33210147
Length = 897
Score = 685 bits (354), Expect = 0.0
Identities = 363/366 (99%), Gaps = 1/366 (0%)
Strand = Plus / Minus
Query: 132 aattcttttcccagtgtgtggcctgctgccttgcctaaatgatgggcgcatgatacctaa 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 aattcttttcccagtgtgtggcctgctgccttgcctaaatgatgggcgcatgatacctaa 838
Query: 192 aagcttttgccatacaaaagctttttaaattcatgaatttgcatttattaattattattc 251
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 837 aagcttttgccatacaaaagctttttaaattcatgaatttgcatttattacttattattc 778
Query: 252 ttagtgcctgtgctaccagtgctctgttcagaaagtctttttctgtccaataattccacg 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ttagtgcctgtgctaccagtgctctgttcagaaagtctttttctgtccaataattccacg 718
Query: 312 actactcccccttcccttcttcatattagtcttataacactgcatgcca-tttttttgcc 370
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 717 actactcccccttcccttcttcatattagtcttataacactgcatgccattttttttgcc 658
Query: 371 agttttgcttcattcatatttacattcttaggatcagatttagttgttacagagcatttt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 agttttgcttcattcatatttacattcttaggatcagatttagttgttacagagcatttt 598
Query: 431 agatgacttgacttgtttaccagaatattgtagttgagactacccaacaacttgcccatc 490
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 597 agatgacttgacttgtttaccagaatattgtagttgagactacacaacaacttgcccatc 538
Query: 491 tggata 496
||||||
Sbjct: 537 tggata 532
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 897
Length adjustment: 10
Effective length of query: 486
Effective length of database: 887
Effective search space: 431082
Effective search space used: 431082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_c18.g1 MSMg01no360_c18.g1 CHROMAT_FILE:
MSMg01no360_c18.g1 PHD_FILE: MSMg01no360_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:51 2005
(461 letters)
>mm_chr1_33109971_33110831
Length = 861
Score = 861 bits (445), Expect = 0.0
Identities = 457/461 (99%)
Strand = Plus / Plus
Query: 1 cagaggaaacacacatctgggcattaagtttctgcacaatcccccccatgatgcatctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaggaaacacacatctgggcattaagtttctgcacaatcccccccatgatgcatctat 260
Query: 61 gatggctttgaactgcatcatgagcactacttgctgagatctttcagaattgagatcttt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatggctttgaactgcatcatgaacactacttgctgagatctttcagaattgagatcttt 320
Query: 121 gaaatatatgtcttaagtgtcccctaagctgaaaccagagatgttttgagacccttaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatatatgtcttaagtgtcccctaagctgaaaccagagatgttttgagacccttaaat 380
Query: 181 tttcgatccaaagtgtcaacctccttcaaaatctgaaaagaagttttcagtaccagaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcgatccaaagtgtcaacctccttcaaaatctgaaaagaagttttcagtaccagaaca 440
Query: 241 caaaagtatttttaattatcactgctttggggctacattgtatatataaatgagcataat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaagtatttttaattatcactgctttggggctacattgtatatataaatgagcataat 500
Query: 301 aaaaaagaacttatttattattacttgaccaagaaatccaggttatgtcgctcaagaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaaagaacttatttattattacttgaccaagaaatccaggttatgtcgctcaagaatt 560
Query: 361 taggaaactaggcagaatagataaggataagatatgtcttatgagttataagattatttt 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggaaactaggcagaatcgataaggataagatatgtcttatgagttataagattatttt 620
Query: 421 tttgccattcttttctgcaaataactgactatgattcattc 461
||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 621 tttaccattcttttctgcaaataattgactatgattcattc 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
