BAC Information

Click to search

BAC

Clone NameMSMg01-360G03
Chromosome1 (Build37)
Map Location 89,328,177 - 89,328,509
singlet/doubletsinglet
Overlap geneTnrc15
Upstream geneLOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, LOC100040600, LOC100040591
Downstream gene3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360G03.T7 (MSMg01no360_g03.b1)MSMg01-360G03.TJ (MSMg01no360_g03.g1)
ACCAG469571AG469572
length734755
length of high quality
(start - end)		485 (45 - 529)49 (73 - 121)
definitionCHROMAT_FILE: MSMg01no360_g03.b1 PHD_FILE: MSMg01no360_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:07 2005CHROMAT_FILE: MSMg01no360_g03.g1 PHD_FILE: MSMg01no360_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTAAAGTGACAGCCTAACAGACTGAAACGTATTTCTTAAAATTAC
CAAGTTCATCAAAAATCAAAGAAGCACACATACTAAGCAAGACTGAGCTA
GGTTCAATACTCAGAAGTACATTGTGTAACAGTTACCAGTATTGGCAAGG
TATGCAAAAAGGCAAAATGAATAGCACTCATATGGCAGTGGCAACCAACA
GCTGTCTAAATGGATGTAATATCCACTCAATAGAGAGGAAATCATGCCTA
AAAATGGAAACCCAGCCTAATTCTAGGGGCTTGCAAGGTCATGGACCTTA
AAAAAGAATCTACTACCACTAGGTTGCTAGACCCAAATAATTCCTTACTA
CAAATTTTAAATTTTACCCTAATACCCATAAGTAAAGCTACCATTCCTCA
TTATAGAAGCCTCTCTTCACAGCAAATGGAGACTACCACAAAAACAAAAC
ACAACAAAAAATCCATACATGGACACAACAATGCAGAGATCAGTAGACCA
TGGGAAGCCCAGGTCTGATGGATACATCTGCATCACAGCTCTTGCATCCA
TAGGTTAGAGAATATCATTTTAGATGTGACTGTTACAGCCCGATCCCCTG
TAAGATATTATCATCAGAGGTATCCCTATGCAGGATACATATGAATGCTT
TCTTTTTTCCCTCATGTAGCTGAACACCCAATAT

CCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGGCCTGCCTGGGTTACCAGAGACCTT
ATCAGATATGGATGGATGACTGGATGGATGGATGGATGGATGGATCNCCC
CCCCCCCCCCCCCTCCCTTCCCCCTCCCTCCTTCCCCCCCTCCCCCCCTT
CCTTCCCCTCCCCTCCTCCCCTTCCCCCCCCCTCCCCCCCTTTTCTCCCC
TTCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCTCCCCCCTCT
TCCCCCCCCCTTTTTTCCCCCCCCTCTTCTTCTCTTCCCCCCCCCCCCTT
CTCTTCCCCCCCCCCCCCCCCCTTCCCCCCCCCTCTCCCCCCCCCTCTCC
TCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCCCCCCCTTTCCCCTCCCC
CCCCCCCCTTTTCCCTCTTCCCCCCCCTCTCTCCCCCCCCTTCCCCCCCC
CCCTCCCCCCCCCCCCCCTCTCCCCCCTTCCCTCCCCTTCCCCCCCCCCC
TCCTCCCCCTTCTTTCCCTCCCCCCCCCCCTTTCCTCCCCCCTTTCTCTC
TCCCTCCCTCCTCCTTTTTCCCCCCCTTCCCCCCCCTCCTCCCTCCCCCC
CCCCCCCTTCCTCCCCTCTTCTCCCCTCCCTTTTCCCCCCCTCCCTCCCC
CTTTCTGTCCCTCCCTCCCTTTCTTCCTCCCCCCCTCCCTCCCCTTCTCC
TCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_g03.b1 MSMg01no360_g03.b1 CHROMAT_FILE:
MSMg01no360_g03.b1 PHD_FILE: MSMg01no360_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:07 2005
         (485 letters)



>mm_chr1_89328177_89329061
          Length = 885

 Score =  613 bits (317), Expect = e-180
 Identities = 329/333 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtaaagtgacagcctaacagactgaaacgtatttcttaaaattaccaagttca 64
           ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 333 gaattcagtaaagggatagcctaatagactgaaacgtatttcttaaaattaccaagttca 274

                                                                       
Query: 65  tcaaaaatcaaagaagcacacatactaagcaagactgagctaggttcaatactcagaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcaaaaatcaaagaagcacacatactaagcaagactgagctaggttcaatactcagaagt 214

                                                                       
Query: 125 acattgtgtaacagttaccagtattggcaaggtatgcaaaaaggcaaaatgaatagcact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 acattgtgtaacagttaccagtattggcaaggtatgcaaaaaggcaaaatgaatagcact 154

                                                                       
Query: 185 catatggcagtggcaaccaacagctgtctaaatggatgtaatatccactcaatagagagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 153 catatggcagtggcaaccaacagctgtctaaatggatgtaatatccactcaatagagggg 94

                                                                       
Query: 245 aaatcatgcctaaaaatggaaacccagcctaattctaggggcttgcaaggtcatggacct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  aaatcatgcctaaaaatggaaacccagcctaattctaggggcttgcaaggtcatggacct 34

                                            
Query: 305 taaaaaagaatctactaccactaggttgctaga 337
           |||||||||||||||||||||||||||||||||
Sbjct: 33  taaaaaagaatctactaccactaggttgctaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |