BAC Information

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BAC

Clone NameMSMg01-360G22
Chromosome1 (Build37)
Map Location 174,163,382 - 174,163,781
singlet/doubletsinglet
Overlap genenone
Upstream geneFcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p
Downstream geneAtp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360G22.T7 (MSMg01no360_g22.b1)MSMg01-360G22.TJ (MSMg01no360_g22.g1)
ACCAG469609AG469610
length768783
length of high quality
(start - end)		425 (44 - 468)420 (71 - 490)
definitionCHROMAT_FILE: MSMg01no360_g22.b1 PHD_FILE: MSMg01no360_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:10 2005CHROMAT_FILE: MSMg01no360_g22.g1 PHD_FILE: MSMg01no360_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGGACTGACGCTGATTGAGTTCATGCAGTTACTTTGCAGATAATT
TCCGATTGGTCTTAGCAGGTCCGAATCATTCAGACAAACAAGTTTCTCTG
GGGCCCTGCTGAAGACTGAAGCATTCAGTTTTCGAGGCAATGGCTACCTC
ACTCTGAAAACTGTATTGAAGTAAGTACATGGGAATCCTAGCAAGCCCAT
AAAGAAGATATGATGTATGCCAGGGTCTCAGTCTCCCTGGCAAATCTGAA
CAACGCTCCAACTTCGTCTTTAAAAAGAACACTTAAGTATTAGCTGAATC
TTTTTCTTTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTAATATAAGGTCTCC
CATTTTACACAGGCAGGCCTCAGAATTGCTGTGTAGCCAAGGATGACTGA
CCTTCCTGCCTCCATCATCTGAGGGCTGGGGAAAAAATAATTTATGTGGT
GGTGGGACCTAAACCAAAGGTTTTAAACCTGTTGATGAATATATCAAAAT
ACATTTTCTTCCCCCCCAAAGTATATAATGTCTCGGTTTTGGTCCCCAAT
TTTTTGGGGGCCCGTAAAAAATTGAATTTTGACACATACCCTATATTATA
AAGAACCGCGTTTTTCTCCCTCTTTGTAGACAATCCTCTCTTTTTTACCT
TCCTTCTTTTTCTCCTAG

ATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATTCAGGAATCTCACACACTCTCTCCTTC
CTCTATCCTTTCTCTCCTATCTAGTGATGGGAGTGAAACCAGGGGCATAA
AGAGTAGGAAAAAGAACCCACAAAGTAGCAAAGACCAGCTACAAGAGGAT
TTGCATGTGAAAAAAATTATTAAATATCTAGAAGTCACTAAGAGAAATGT
TTAAGAACAATAGAAATAGGCTTGAAATTAAGAGCCCTTGCTGGTCTTCC
AGAAGGCCTGGGTTCAGTTCCCAGTACCTTACACTTGTAATCCCATAGCC
AGAGGAGCCAAATCTCTTCTTTCGGCCTCTGAGAGCATCAAGCACACACA
GGAACTTGGTAGAAGTGAAGAACTGTCCTTTACAAGAACTGTCCCTTACA
CATCAAGAAGGTCAAATTGATTGGCAGGACATCTGCCAGACTTAAGTGTT
GAGTCCCATTTATTTTTGCGAAATCATCTGCTGTAGCTGGGGACTCTGGG
AAAAAAACAAACGTCTAAAACAGGAAAAAGGCATGTTAGTTTAATCAGAA
ATTTTCCCTTAAATTCTAATTCTGGGCGGGGGTTTTCAGCCCCCCCTTTA
TTTTTTTACCCCTAACTTTGCTTCCAAAAGGGCCCCAAACCCCACTTTGG
AGTGTGGGTGCACAAATTACCTTTTTGCGTTAGTCAAAAATTGGTTTACT
CTGTAACACCCTCCCCCTCGTCCCTTATACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_g22.b1 MSMg01no360_g22.b1 CHROMAT_FILE:
MSMg01no360_g22.b1 PHD_FILE: MSMg01no360_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:10 2005
         (425 letters)



>mm_chr1_174163179_174164003
          Length = 825

 Score =  712 bits (368), Expect = 0.0
 Identities = 398/422 (94%), Gaps = 22/422 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctggactgacgctgattgagttcatgcagttactttgcagataatttccgat 63
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctggactgagggtgattgagttcatgcagttactttgcagataatttccgat 263

                                                                       
Query: 64  tggtcttagcaggtccgaatcattcagacaaacaagtttctctggggccctgctgaagac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggtcttagcaggtccgaatcattcagacaaacaagtttctctggggccctgctgaagac 323

                                                                       
Query: 124 tgaagcattcagttttcgaggcaatggctacctcactctgaaaactgtattgaagtaagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgaagcattcagttttcgaggcaatggctacctcactctgaaaactgtattgaagtaagt 383

                                                                       
Query: 184 acatgggaatcctagcaagcccataaagaagatatgatgtatgccagggtctcagtctcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acatgggaatcctagcaagcccataaagaagatatgatgtatgccagggtctcagtctcc 443

                                                                       
Query: 244 ctggcaaatctgaacaacgctccaacttcgtctttaaaaagaacacttaagtattagctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctggcaaatctgaacaacgctccaacttcgtctttaaaaagaacacttaagtattagctg 503

                                                                       
Query: 304 aatctttttctttcttttctctctctctctctctctctctctctctctctctctctctct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 504 aatctttttctttcttttctctctctctctctctctctctctctctctctctct------ 557

                                                                       
Query: 364 ctctctctctctctctttctttctttctttaatataaggtctcccattttacacaggcag 423
                           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ----------------ttctttctttctttaatataaggtctcccattttacacaggcag 601

             
Query: 424 gc 425
           ||
Sbjct: 602 gc 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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