Query= MSMg01no360_h21.b1 MSMg01no360_h21.b1 CHROMAT_FILE:
MSMg01no360_h21.b1 PHD_FILE: MSMg01no360_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:15 2005
(495 letters)
>mm_chr1_148371882_148372774
Length = 893
Score = 862 bits (446), Expect = 0.0
Identities = 479/490 (97%), Gaps = 2/490 (0%)
Strand = Plus / Plus
Query: 6 gaattcaccctgatatccatacatttcctgtagcttctttcttcgcatattacatttggg 65
||||||||||||||| || ||||| ||||||||| |||||||||| |||||||||||||
Sbjct: 206 gaattcaccctgata-acacacattccctgtagctcctttcttcgcttattacatttggg 264
Query: 66 taattaagaaaagtataggcattcagatttttgtagagttctgcattgattggctttctt 125
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taattaagatatgtataggcattcagatttttgtagagttctgcattgattggctttctt 324
Query: 126 tatcatccaaaaaataaaaaatctaacaattcgaatttaaaaacaaaataattcagtcta 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatcatccaaaaaataaaaaatctaacaattcgaatttaaaaacaaaataattcagtcta 384
Query: 186 tcttaactttcctccttactacactaaaacctgtacatatgcaacttggggtgtttcctt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttaactttcctccttactacactaaaacctgtacatatgcaacttggggtgtttcctt 444
Query: 246 ttaaatttgaacacaacatatttattattatttctcattaatatttccaaaatttttctt 305
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 ttaaatctgaacacaacatatttattattatttctcattaatatttccaaattttttctt 504
Query: 306 tgcttttgatcatatagttcactgaaacttattttatttttcttaattggtattgtgtat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcttttgatcatatagttcactgaaacttattttatttttcttaattggtattgtgtat 564
Query: 366 aaaaatgttaacttacttatttggtccctatttgaattcaaactgtctcccttataatgg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaaatgttaacttacttatttggtccctatttgaattcaaactgtctcccttataatgg 624
Query: 426 ggaaaaaaaaaaacagagctataaagctagctcataaagctagctgattggctttgtagg 485
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaaaaaaaaaa-cagagctataaagctagctcataaagctagctgattggctttgtagg 683
Query: 486 aattttcagt 495
||||||||||
Sbjct: 684 aattttcagt 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 893
Length adjustment: 10
Effective length of query: 485
Effective length of database: 883
Effective search space: 428255
Effective search space used: 428255
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_h21.g1 MSMg01no360_h21.g1 CHROMAT_FILE:
MSMg01no360_h21.g1 PHD_FILE: MSMg01no360_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:15 2005
(453 letters)
>mm_chr1_148523951_148524803
Length = 853
Score = 861 bits (445), Expect = 0.0
Identities = 451/453 (99%)
Strand = Plus / Minus
Query: 1 tctattagttatattagtaacatgcttgattgctgaatatttggacattcaagtatttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tctattagttatattagtaacatgcttgattgctgaatatttggacattcaagtatttat 594
Query: 61 tgtttgcatacacacatatgtattaacctccaatgttaattatggttttatttctgctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgtttgcatacacacatatgtattaacctccaatgttaattatggttttatttctgctca 534
Query: 121 tcttacaaaaagttgggagaaaaaaaattgcacaagaaaatgcattgtagttgtggtcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tcttacaaaaagttgggagaaaaaaaattgcacaagaaaatgcattgtagttgtggtcat 474
Query: 181 ataatttccacatttccattgcccttccgtattcatacttaatttttatgtcaaaaaacc 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 473 ataatttccacatttccattgcccttccgcattcatacttaatttttatgtcaaaaaacc 414
Query: 241 ctcaatgcaattaatataatcacatttcagatttcagtagagaattagtcatagtatata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctcaatgcaattaatataatcacatttcagatttcagtagagaattagtcatagtatata 354
Query: 301 ttaaataatttgaacacaataacaaaggaaaagctggataaaatgttgacaaaatatgat 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 353 ttaaataatttgaacacaataacaaaggaaaagctggctaaaatgttgacaaaatatgat 294
Query: 361 aatgtagtgactcaaaccagatttatctctcaatagtaattttttaccaaatgaaggtac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aatgtagtgactcaaaccagatttatctctcaatagtaattttttaccaaatgaaggtac 234
Query: 421 tatcctaataactcataactcaaagttatgaac 453
|||||||||||||||||||||||||||||||||
Sbjct: 233 tatcctaataactcataactcaaagttatgaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
