BAC Information

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BAC

Clone NameMSMg01-360I16
Chromosome1 (Build37)
Map Location 44,387,060 - 44,387,428
singlet/doubletsinglet
Overlap geneLOC435619
Upstream geneLOC100041644, Nck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik
Downstream geneTxn-ps1, Gulp1, LOC100041738, LOC100041752, LOC383640, Col3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360I16.T7 (MSMg01no360_i16.b1)MSMg01-360I16.TJ (MSMg01no360_i16.g1)
ACCAG469691AG469692
length788764
length of high quality
(start - end)		447 (46 - 492)422 (73 - 494)
definitionCHROMAT_FILE: MSMg01no360_i16.b1 PHD_FILE: MSMg01no360_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:19 2005CHROMAT_FILE: MSMg01no360_i16.g1 PHD_FILE: MSMg01no360_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCTGCTCTGAGCCCCATTTGGTTTATCCTCCAGAAACTCC
CTACCCCATCCCCTTCCTCTTGCATCTATGAGGGTGTCCCCCAACCCACT
CCTGCCTTCTTTCTTTGAAAGGAAATAAGTCAGGTGTGATGGCGCTTGCC
TGCAAAGTGAGAACTCCAGAGTTGAGGCAGGAGAATCAGGAATTTGTATC
CAACCTAGGATATGAAGCAAAGGCTTTTTACATAAAACCAAAGTTAAAGT
AGTTCACCTCCCCCCCCCCAAAAAAAACAAACTCATCCAAATATAAATCA
GATCAAGTGAACAACTACAAAACTGAAACTGGTCTGAGGAACCTGTGGAG
AGAATAAAGGGCTAGAAACACAAAGATAGACAACAAGTCTGATTGATCAA
GCTGTCAAATTTTTATTATTCCCAGGCAGGTTTTATGCCCACAGAAGGTA
TGGGGAGGGGGGATGACACAGAATCACTTTGTTTCTGGGAGAACGCACCT
GTTCTCAAAAGCAGGAAATTGGTTAGTAAAAAACTGCGAATGTAACACAA
AAAGGGCTAACCAGCCCTCACTGGGGAAAAAAGCCCCCTTGCTATTTTAA
TTTTATATCGCCCACTATCAAGGAATGGCACGGCCAAAAAAAAAAAAAAG
GGTGGTTTTTGAAACACACACTTACAATACTTATTTTTTTTCTTATATAT
ATCACCCTTTTTTAACCTTTCTCCATTATTCTCTTTTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCCTCTTCCATTTTCTCCATAGCCCAG
GTAAGGAGAGACCATAGTCTTTTGCTTCTCTCCAATGCAGACACCAAGTA
AACCTTCATCCATCCCAGGAATCACATAACCCTGCCCAATGTATTTGTCA
AAGGTGTGGTTCCTTGAATAGCTGGAGTCAAAGAGGGTGGCATCCAGAAG
CATGCCATTGTAATGATACCTGAGGAAGTCCCCACTCTGACTTCTCTGCT
CACAGTTCTCAGGGATGACCTTGTTCTCAACAGAAATGGTATCCTTGGGG
TTATGGAGGCTCAACAGTGCAACATCAAAGACTAGGGACGCCTGCCCAGG
CAAGTGTTTTGCATCTCCCTCCTCCCCATAGCCAGAAAAAGTGACCCGTC
CAGCAGGTCCAGTTATTCGAGGATCTCGAGGGGACCTCCTCCTAATAACC
AAATGGTGGGTAGAGAGAGACGAGGGTCTTGTACGATTAACGACACGGAG
ACCCGTTCTGAAGTTGTATCAAGACCCCATTGTATGAGAAAAGTCCAAGG
CTTATATGCCCAGCCAAAGGGGAACACACATAATTATTTTGGGATGTGTA
GGGCTTTACATTTTTAGCGAAACTACTATTTTTCCCGGGTTCTTCTTTTA
ATCATTTCTCCATTCTATCTGACATTTCCGTACAATCTTTTTTTTTTCTT
TTATCCCTTTGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_i16.g1 MSMg01no360_i16.g1 CHROMAT_FILE:
MSMg01no360_i16.g1 PHD_FILE: MSMg01no360_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:19 2005
         (422 letters)



>mm_chr1_44386860_44387681
          Length = 822

 Score =  714 bits (369), Expect = 0.0
 Identities = 369/369 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctcttccattttctccatagcccaggtaaggagagaccatagtcttttgcttctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctcttccattttctccatagcccaggtaaggagagaccatagtcttttgcttctctc 260

                                                                       
Query: 61  caatgcagacaccaagtaaaccttcatccatcccaggaatcacataaccctgcccaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatgcagacaccaagtaaaccttcatccatcccaggaatcacataaccctgcccaatgt 320

                                                                       
Query: 121 atttgtcaaaggtgtggttccttgaatagctggagtcaaagagggtggcatccagaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgtcaaaggtgtggttccttgaatagctggagtcaaagagggtggcatccagaagca 380

                                                                       
Query: 181 tgccattgtaatgatacctgaggaagtccccactctgacttctctgctcacagttctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccattgtaatgatacctgaggaagtccccactctgacttctctgctcacagttctcag 440

                                                                       
Query: 241 ggatgaccttgttctcaacagaaatggtatccttggggttatggaggctcaacagtgcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatgaccttgttctcaacagaaatggtatccttggggttatggaggctcaacagtgcaa 500

                                                                       
Query: 301 catcaaagactagggacgcctgcccaggcaagtgttttgcatctccctcctccccatagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catcaaagactagggacgcctgcccaggcaagtgttttgcatctccctcctccccatagc 560

                    
Query: 361 cagaaaaag 369
           |||||||||
Sbjct: 561 cagaaaaag 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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