Query= MSMg01no360_m05.b1 MSMg01no360_m05.b1 CHROMAT_FILE:
MSMg01no360_m05.b1 PHD_FILE: MSMg01no360_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:36 2005
(475 letters)
>mm_chr1_148122508_148123382
Length = 875
Score = 851 bits (440), Expect = 0.0
Identities = 464/476 (97%), Gaps = 8/476 (1%)
Strand = Plus / Plus
Query: 4 ggaattctctggttaactttttagggtcacttagcatttctaatactaaagcttatgtct 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctggtgaaatttttagggtcacttagcatttctaatactaaagcttatgtct 263
Query: 64 gtccacgagttcctcaataaataatctaatgatgtatattaaattccagaaaaggaggta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtccacgagttcctcaataaataatctaatgatgtatattaaattccagaaaaggaggta 323
Query: 124 atgaggcaggagacaacgaaacaggtcaaaaacaaacatatgtagacccaatcaaaatct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgaggcaggagacaacgaaacaggtcaaaaacaaacatatgtagacccaatcaaaatct 383
Query: 184 ttgctaattcattatcatagacttgatttggctgacagaggccttgctgaacctgaggtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgctaattcattatcatagacttgatttggctgacagaggccttgctgaacctgaggtt 443
Query: 244 gataattctccttcaggagctgcataggattctttt----ctgtgcatactggttcttga 299
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 444 gataattctccttcgggagctgcataggattc----aaacctgtgcatactggttcttga 499
Query: 300 taaaatgaatccagtatgggcaccagcgtaggttgcaaggctaagcaacataggggaagg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taaaatgaatccagtatgggcaccagcgtaggttgcaaggctaagcaacataggggaagg 559
Query: 360 tctaacacggagcatctctaaattccccgtgagacaaacctggtttgcaaggaggttggc 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctaacacggagcatctctaaattccccgtgagacaaacctggtttgcaaggaggttggt 619
Query: 420 atctgttttcaatcttatcctaaggatttttctaaggctctgcctcccctccccca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atctgttttcaatcttatcctaaggatttttctaaggctctgcctcccctccccca 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_m05.g1 MSMg01no360_m05.g1 CHROMAT_FILE:
MSMg01no360_m05.g1 PHD_FILE: MSMg01no360_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:36 2005
(547 letters)
>mm_chr1_148352536_148353482
Length = 947
Score = 1029 bits (532), Expect = 0.0
Identities = 544/548 (99%), Gaps = 1/548 (0%)
Strand = Plus / Minus
Query: 1 cttaaaattaaagataattttttcagagaagaatttcagataatcattatccaaatataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cttaaaattaaagataattttttcagagaagaatttcagataatcattatccaaatataa 508
Query: 61 gaaaattaagtatgaaggattcacaattttttggtagctcccaattatgtcttcttccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaaaattaagtatgaaggattcacaattttttggtagctcccaattatgtcttcttccta 448
Query: 121 tttatagatgccactccatccacagggtaattccacgatattttacacagcatgaaacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tttatagatgccactccatccacagggtaattccacgatattttacacagcatgaaacag 388
Query: 181 ggatgtgtgactatttctttttttctagtatacctttagtttcaacaaccaagtcccaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggatgtgtgactatttctttttttctagtatacctttagtttcaacaaccaagtcccaca 328
Query: 241 gggacacagaccttatagaatttgacacataaacacttaactataataaaacacaaaatt 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 327 gggacacagaccttatagaatttgacacacaaacacttaactataataaaacacaaaatt 268
Query: 301 tgtgaagaaagtccttgtggtgtcaatctgagattttatttactttaattatgaaaacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgtgaagaaagtccttgtggtgtcaatctgagattttatttactttaattatgaaaacta 208
Query: 361 aatgagctaataattaaatagtattaaattaaaatgttcttgatttaaggaatctggaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aatgagctaataattaaatagtattaaattaaaatgttcttgatttaaggaatctggaat 148
Query: 421 tcttttgaaaaaaaatgaatgagatcatgtaaaattagaattctaacacttttt-ctcat 479
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 147 tcttttgaaaaaaaatgaatgagatcgtgtaaaattagaattctaacacttttttctcat 88
Query: 480 ttcctgacttctttgtctctttaattttttcttttaatatacataatagaaatatatttt 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 87 ttcctgacttctttgtctctttaattttttcctttaatatacataatagaaatatatttt 28
Query: 540 gaattgac 547
||||||||
Sbjct: 27 gaattgac 20
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
