BAC Information

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BAC

Clone NameMSMg01-360M21
Chromosome1 (Build37)
Map Location 172,970,496 - 172,970,924
singlet/doubletsinglet
Overlap genenone
Upstream geneDdr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4
Downstream geneFcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360M21.T7 (MSMg01no360_m21.b1)MSMg01-360M21.TJ (MSMg01no360_m21.g1)
ACCAG469892AG469893
length743756
length of high quality
(start - end)		482 (46 - 527)513 (76 - 588)
definitionCHROMAT_FILE: MSMg01no360_m21.b1 PHD_FILE: MSMg01no360_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:39 2005CHROMAT_FILE: MSMg01no360_m21.g1 PHD_FILE: MSMg01no360_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTATACCAGGATGGCCTTGAACTCAGAGATCCCAAGTGCT
GGAATTAAGGTGTTTGCCACCACTGCCCAGCTGTTTGTTTGGTTTTTAAT
CTTATTATTTCACTTATTTATTTTGCTCTCTTTTTACCCTACAGTATGCA
AATGAGTGAGTCTCTGCATCTGTGTCTGTCCTTGTGCCTCTTCTTGGGAT
CTCTTCTTTCTGTTTGTTTTGTCCTATTTCAATATGTTAGCTTTTGTTTT
ATTATATTTTATTATATTATTATTTCTTAGAAGGTTTTTTTTTTTTTTTT
TTTTGGNTTTTCAAGACAGGCTGTCTCTGTGTAGCCCTGGCTGACCTGGA
ACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTC
TGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACGCCCGGCTTTT
TGTTTTATTTTGTTGTTGTTTTTTTTGTTGNTGTTGCTTGGTTTCTAAAG
AGAGAGACAAGAATGGGGTAGATCCAGGTAGGAGGATTGGCATATGTTAT
GTGAGAAAAAAATCCATTTTCATAAATAGGCAAGCCATAGTATCACTAAA
AAAAAAAGGAAGTTTCTAGATTTCCTCCATTCCAATGGTAAAGGAGGCAA
AAAACTCCTTTAGAACTATAATGAATGTAAACAAGGTTCCTTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGACAACTTCACATACATACAGA
ATGTATTTTGATTATTGCCTCCCACACCATCTCTTATTTTTTTAAGACAT
CTTTTATCTATCTTCTGAGAATTATATACATGCACAGCCTGTACCTTATT
CTATTCCCTCCAAAGGCTCCCCTCCTGCTACCTTTAACAGCCCCCGACAC
ACATCCTCCTCCAGTCTTCATGCTCCCTTCTCCCTGAGTCCACTTAGTAC
AGTCTGCTGGAATGTCGACTGATCGTGCTGGACTGATCTTGCTCAGGCAA
CCTTTTGAGGTCATGTCCAACGTCATGTTCAGAAGACAGAGTTTTGCAGC
ACTCCTCCTTCCTATTCTGTTCCCTATTCTCCAGCCCTTACATTCTGTCC
TCTCCCTCCTCCTCAGTGTTCCCTGAATCTTGGGAGGCTGATAAAAATGT
TCTGTTTAGGGCTGAACATTCAACAGTCGCATATTTTCAGCATTTTGATC
ATTTTTGGAGTTTCTGCACTAACTCTTGTTGCCCATTGCTAAAAGAAGCA
TCTCTGGGCAACGCCGATAGCTCTCAACTGTAACACCAATATTTAGAAGG
CAGTTGATACATCCCCTTAATAAAAAACATCGGAGTCCCCCCTAAGGCCG
GCCCCCCCAAACCAGGGGTTTTTCCAGTTTTAAGAAACAAAAAGGAATTC
CCGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_m21.g1 MSMg01no360_m21.g1 CHROMAT_FILE:
MSMg01no360_m21.g1 PHD_FILE: MSMg01no360_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:39 2005
         (513 letters)



>mm_chr1_172970496_172971408
          Length = 913

 Score =  830 bits (429), Expect = 0.0
 Identities = 429/429 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggacaacttcacatacatacagaatgtattttgattattgcctcccacaccatctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttggacaacttcacatacatacagaatgtattttgattattgcctcccacaccatctctt 370

                                                                       
Query: 61  atttttttaagacatcttttatctatcttctgagaattatatacatgcacagcctgtacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atttttttaagacatcttttatctatcttctgagaattatatacatgcacagcctgtacc 310

                                                                       
Query: 121 ttattctattccctccaaaggctcccctcctgctacctttaacagcccccgacacacatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttattctattccctccaaaggctcccctcctgctacctttaacagcccccgacacacatc 250

                                                                       
Query: 181 ctcctccagtcttcatgctcccttctccctgagtccacttagtacagtctgctggaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctcctccagtcttcatgctcccttctccctgagtccacttagtacagtctgctggaatgt 190

                                                                       
Query: 241 cgactgatcgtgctggactgatcttgctcaggcaaccttttgaggtcatgtccaacgtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 cgactgatcgtgctggactgatcttgctcaggcaaccttttgaggtcatgtccaacgtca 130

                                                                       
Query: 301 tgttcagaagacagagttttgcagcactcctccttcctattctgttccctattctccagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tgttcagaagacagagttttgcagcactcctccttcctattctgttccctattctccagc 70

                                                                       
Query: 361 ccttacattctgtcctctccctcctcctcagtgttccctgaatcttgggaggctgataaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  ccttacattctgtcctctccctcctcctcagtgttccctgaatcttgggaggctgataaa 10

                    
Query: 421 aatgttctg 429
           |||||||||
Sbjct: 9   aatgttctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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