Query= MSMg01no360_n09.b1 MSMg01no360_n09.b1 CHROMAT_FILE:
MSMg01no360_n09.b1 PHD_FILE: MSMg01no360_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:41 2005
(524 letters)
>mm_chr1_134454285_134455210
Length = 926
Score = 913 bits (472), Expect = 0.0
Identities = 512/533 (96%), Gaps = 16/533 (3%)
Strand = Plus / Minus
Query: 1 cccctctgcctgggtcctctgtaggcaagatgccatctgctggggctgagtccaaaagca 60
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 726 cccctctgcctgggtcctctgtcggcaagatgccatctgct-gggctgagtccaaaagca 668
Query: 61 gaaagatagatgagatgacctccagacagccctgtcactgttgagactccaagctattgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gaaagatagatgagatgacctccagacagccctgtcactgttgagactccaagctattgg 608
Query: 121 cagccttggccctggctctaactctaacctgaccttgttctggccccaagccagagatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cagccttggccctggctctaactctaacctgaccttgttctggccccaagccagagatga 548
Query: 181 ctcagccacctctgccctcccttcccccaac----cccgtctgtccataagcagcccaga 236
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 547 ctcagccacctctgccctcccttcccccaaccccgcccgcctgtccataagcagcccaga 488
Query: 237 ggctaggccagta-----tttttcctgttccttgcctgcagggaaagggagtccctagag 291
||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 487 ggctaggccag-agaagc-----cctgttccttgcctgcagggaaagggagtccctagag 434
Query: 292 accatcccagctgtgcaccccgtgccccctgcttgtgctccctcaaagcaaccatccttt 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 accatcccagctgtgcaccccgtgccccctgcttgtgctccctcaaagcaaccatccttt 374
Query: 352 tattaattctgcaatttcccaaagtgccaggagcctctctcatctgacagccgcagcatc 411
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgttaattctgcaatttcccaaagtgccaggagcctctctcatctgacagccgcagcatc 314
Query: 412 tgttcctcacacttcccagaaggctggtggatccgtgccagcctcctccccaccactccc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgttcctcacacttcccagaaggctggtggatccgtgccagcctcctccccaccactccc 254
Query: 472 ccagnctcacactccttgcgtctgaatctgaattcgtgccccctgctcacctt 524
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 253 ccagtctcacactccttgcgtctgaatctgaattcgagccccctgctcacctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 926
Length adjustment: 10
Effective length of query: 514
Effective length of database: 916
Effective search space: 470824
Effective search space used: 470824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_n09.g1 MSMg01no360_n09.g1 CHROMAT_FILE:
MSMg01no360_n09.g1 PHD_FILE: MSMg01no360_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:41 2005
(423 letters)
>mm_chr1_134291936_134292758
Length = 823
Score = 772 bits (399), Expect = 0.0
Identities = 417/423 (98%)
Strand = Plus / Plus
Query: 1 tgattctgagacagccaaatcgatgaacctatgttctcaactgtaagtgaacagggccag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tgattctgagacagccaaatcgatgaacctatgttctcaactgtaagtgaacagggtcag 260
Query: 61 ccatatgcatggctcttcacattgctattgtgaggagtcaagtgaatgaatctctgacat 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatatgcatggctcttcgcattgctattgtgaggagtcaagtgaatgaatctctgacat 320
Query: 121 gcctgtgccgaacacatgactggcgtcagtaaagctgaatgaagggagcgatgtgttcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctgtgccgaacacatgactggcgtcagtaaagctgaatgaagggagcgatgtgttcac 380
Query: 181 tcccccacgttgcaggagaaaagcagacttgacctactaaacatgctctttgaatagaaa 240
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tcccccacgttgtaggagaaaagcagacttgacctactaaacatgctccttgaatagaaa 440
Query: 241 tctcatttataataaagaacaaagtcagtcctcactagtattacatttgctaacttggtg 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcatttagaataaagaacaaagtcagtcctcactagtattacatttgctaacttggtg 500
Query: 301 actatgtatggaaataaagataagagtgttacagcgtcctgtgtccttgttaacacccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actatgtatggaaataaagataagagtgttacagcgtcctgtgtccttgttaacacccca 560
Query: 361 gtcagtttggtcaactgatgcttttccctatagaggcaaaagtgccaagatggataggta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 gtcagtttggtcaactgatgcttttccctatagaggcaaaagtgccaagatggttaggta 620
Query: 421 agt 423
|||
Sbjct: 621 agt 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
