BAC Information

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BAC

Clone NameMSMg01-360O03
Chromosome1 (Build37)
Map Location 48,515,014 - 48,515,258
singlet/doubletsinglet
Overlap geneLOC674566
Upstream geneLOC666869, LOC546734
Downstream geneLOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360O03.T7 (MSMg01no360_o03.b1)MSMg01-360O03.TJ (MSMg01no360_o03.g1)
ACCAG469949AG469950
length762751
length of high quality
(start - end)
246 (72 - 317)245 (75 - 319)
definitionCHROMAT_FILE: MSMg01no360_o03.b1 PHD_FILE: MSMg01no360_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:45 2005CHROMAT_FILE: MSMg01no360_o03.g1 PHD_FILE: MSMg01no360_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGAGGATCCGCGGAA
TTCACTTAATTGCGATTGAGCTTGAGTTCTTCCAAGTTTGCTGTTTACTT
TACTGCACTGCTTACTAGCAGAGAGAGCTAGAGAGATTTTTCTGCAGTTA
GAGGTTTTTGGTCTGAAATGAAAAGGAAGGAAGTTCTAATATCAGTAGCA
GTGCGACAGACCAGGGGTTCCCAGAATTCCCTTTGACCTCAGATCCAAGG
GATCCAGAGATGGCAGAGTCACTGGGACCTACACACTCTCTGCCCCCCCC
CCCAAAAAAATACAACCTCTGTTTTTTAATAAAAAACTGACTTAAAGAAA
ATGGNACAGAGTGATATCTATTTTAGCCATTTTAGCACTCAAACATGTGT
TTGCGCGTGAGCGCGCACACACACACTCACATGCATTATAACGTGTTTGA
ATAAATGAATAAAGTAAAAAATCATTCAGCTGGCATTTTTTTTAATAAAG
GGTGAGTTCTTAGTGTCCCAATGAAATTCTCTTGTTATCTTCGAATTGAT
TAATTTCCACTCCAGTTCATTGTCTCTCCGAATTGCCATGTAGCGACTTA
CCATTGCCTTCTGACCCCCTCCTTGTTTCTTCTTCACCTGTTATCAAACC
CGATTCAATGTTTATTTTTTTCCACTGATCACATACTACTACTATCCCCA
ATGAACTCATTATCCTCCTTTTTTTATTCCCCCTGTTTATTTTCCCAACC
CTCTCCCCTTTT
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATTAGGTTCCCCCCAAAATAGTTTG
TACAAGAATGTCTACATGTAACTTTTGAGAACCTGTTCCTAGTTGGTTTT
GATTGATAAATAATGATGGCAATAGCCAATAGTTGGGTAGAGCAGATAGA
GACACCATGTTCTGAAAAGGGACAGAGATGCATGGCTGCCATGTAAAGGA
GCTAAGAGAGAGTGGCCCAGAGCATGGACCACTTTGGCCTCTGTCTGGGT
CCACAGTAGCCAAGATAGAACATATAATTAGTAAGTAATAACTCAGAATT
AACTGCATGGAGTTTATGCAGTGGCCCAGCTATTGAGTTGCTTGCAACCT
TATTTACCAATCAGAACCCACTGAGGGCAGGTTCCCAGAATCTAAGTGCA
TACACTTTCATACAGTTTTTTTTTGGTGGGGGGGAATATAATTAGCATTT
GTCATACGCGCAGCTTCTGATTATGTCTTACATCTGTACAACATACTCCT
GAACTCTCCTATTCTCATGCTATACAAAAATGTCAATGTTTTTATACCCA
TTTTCATCCCTACATCGTCCTTCTCCCCAGTATACAGTTTGTTATCTCTC
CTCCAATTTCTTAAATTCTTTCCTCCATTTTTCACCTTTTCTTTGCCTTG
CGTTTTGCTTTCTCCCTTTTACGTTCCCTTTTCCCCTCCTTTTCCCTTTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_o03.b1 MSMg01no360_o03.b1 CHROMAT_FILE:
MSMg01no360_o03.b1 PHD_FILE: MSMg01no360_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:45 2005
         (246 letters)



>mm_chr1_48514823_48515465
          Length = 643

 Score =  404 bits (209), Expect = e-117
 Identities = 237/249 (95%), Gaps = 7/249 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagttcttccaagtttgctgtttactttactgcactgcttactagcagagagagctag 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 436 ttgagttcttccaagtttgctgtttactttactgcactgcttacaagcagagagagctag 377

                                                                       
Query: 61  agagatttttctgcagttagaggtttttggtctgaaatgaaaaggaaggaagttctaata 120
           |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 376 agagatttttctgcaggtagagggttttggtctgaaatgaaaaggaaggaagttctaata 317

                                                                       
Query: 121 tcagtagcagtgcgacagaccaggggttcccagaattccctttgacctcagatccaaggg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 316 tcagtagcagtgcgacagaccaggggttcccagaattccctttgacctcaaatccaaggg 257

                                                                       
Query: 181 atccagagatggcagagtcactgggacctacacactctctgcccccccc-ccc--aaaaa 237
           | |||||||||||||||||||||||||||||||||||    |||||||| |||  |||||
Sbjct: 256 aaccagagatggcagagtcactgggacctacacactc----ccccccccacccaaaaaaa 201

                    
Query: 238 aatacaacc 246
           |||||||||
Sbjct: 200 aatacaacc 192


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 643
Length adjustment: 9
Effective length of query: 237
Effective length of database: 634
Effective search space:   150258
Effective search space used:   150258
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)