BAC Information

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BAC

Clone NameMSMg01-361C06
Chromosome1 (Build37)
Map Location 50,438,773 - 50,439,113
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627430, LOC100041981, EG666962, EG666970
Downstream geneLOC100041993, Tmeff2, Sdpr, LOC383504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361C06.T7 (MSMg01no361_c06.b1)MSMg01-361C06.TJ (MSMg01no361_c06.g1)
ACCAG470146AG470147
length760763
length of high quality
(start - end)		585 (52 - 636)532 (82 - 613)
definitionCHROMAT_FILE: MSMg01no361_c06.b1 PHD_FILE: MSMg01no361_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:05 2005CHROMAT_FILE: MSMg01no361_c06.g1 PHD_FILE: MSMg01no361_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATGAATGAGTTCTATGTTTGTATAAATGTCACTTATCT
TTGTCCTGTCTCACCTCCTTCCTTGATTGCCCACCTCCTCTCACACTAAT
GTTCTTCCCACTTGATTTTTCAGCTCTCAAATATTTTTATCATATGATCT
TAAGGTTTTACCTTAATACACAGTTTAGTCTCCCAGCATTCTATCAGTAA
TGCTTGGAAAACTGTCATACAGTAAAATAACATTTGATTCCATCAATCGT
CATTCATGTTTATTCTAAATTTCTCACTTGTGATAACTTGTACTTTGCAG
CTCTCCCTGCTATTGTGATGAGAACACAAACTGAATCTCAAAGAATTTCA
AGACTAGATTATCTTCAGACCTATTTTCTTGCAAAATATTTCCTATTGAC
TCAAAATTACCTTGTATACTGTTTGACATGTTCAAAATTAATTTTGTAAA
CTCTTTTGAAACCTGAAGATATGTGTCATGAATCTGTCCATTCTACTTCA
TTCTGATTTTTATGCATGTTCTGTACACACACACACATAAAAATATGTAT
ATTTGTATATTAATATAATGGACTACTGTACCTGGTTGAAATGGATATAA
GAATATCATTTTGATATTTATTATGTTTTTTAGNAATTAAAGACTACCAT
AATTTATGAAACTTGTCATATATACCATATAAAATATATATAAAGTCATT
TGACACTATC

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACAAGATTTCTTAATT
ATGCAAAATGTTAGGAGGCAATATGAATTGTATGAGGAGCTTCACTAAGC
TGAAAGAACAGAAGCAGCTTCACTAATGAGCCAGCTTTGTCAAACAAACA
TTAAAGAAAGAGATAAAGAGATTTATGAAGTGGTGATCTCAGGGCAAGAT
CCTACACAGCTAAATTATTGGTTGTGTGTGCAGTTGAACAAGGAATAGAT
TTGACTTTTAATCTGGAATGAACTACAATGTAGAAATGAAGGATACACTT
TTGATCCAAATTTTGAGGCTAGAAGGCACAGTCTTTTGACAGGGAACTTG
AAAAGTGGCCAATAAGAAGGTCTCACCCACACTTCAGGTCAGTGCCAGCT
CCTGGCCACCTTGGGCACAAAATCTGCAGATGGCCTCTAGGTCCCCAGAG
GACTCTTTCCACAATCTTAGGATCACTGGTGAGTGGAACACAACATCTGT
TCCAAATCACTCATGACAGGCCTGTGACAGCAGGAGCAAGGACACGGGAG
CCCTGCCTGACCAGCATCTTGGATTCCTTCTGATCAGTGCTGGTATACCT
TTGGTTCAAATGCACCAGAGAGCTCCCCCTGTCCCCAGAGGGACACCCCT
TTTAGCACTGTACATGCCCCAGAACTTAAAATTCTGAATCCCCCGAAAGA
AAGAACTTGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_c06.b1 MSMg01no361_c06.b1 CHROMAT_FILE:
MSMg01no361_c06.b1 PHD_FILE: MSMg01no361_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:05 2005
         (585 letters)



>mm_chr1_50438326_50439313
          Length = 988

 Score =  619 bits (320), Expect = 0.0
 Identities = 335/342 (97%), Gaps = 5/342 (1%)
 Strand = Plus / Minus

                                                                       
Query: 248 gtcattcatgtttattctaaatttctcacttgtgataacttgtactttgcagctctccct 307
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 788 gtcattcatgtttattctaaatttctcac-agtgataacttgtactttgcagctctccct 730

                                                                       
Query: 308 gctattgtgatgagaacacaaactgaatctcaaagaatttcaagactagattatcttcag 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gctattgtgatgagaacacaaactgaatctcaaagaatttcaagactagattatcttcag 670

                                                                       
Query: 368 acctattttcttgcaaaatatttcctattgactcaaaattaccttgtatactgtttgaca 427
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 acctattttcttgcaatatatttcctattgactcaaaattaccttgtatactgtttgaca 610

                                                                       
Query: 428 tgttcaaaattaattttgtaaactcttttgaaacctgaagatatgtgtcatgaatctgtc 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgttcaaaattaattttgtaaactcttttgaaacctgaagatatgtgtcatgaatctgtc 550

                                                                       
Query: 488 cattctacttcattctgatttttatgcatgttctgtacacacacacacataaaaatatgt 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cattctacttcattctgatttttatgcatgttctgtacacacacacacataaaaatatgt 490

                                                     
Query: 548 a----tatttgtatattaatataatggactactgtacctggt 585
           |    |||||||||||||||||||||||||||||||||||||
Sbjct: 489 atgagtatttgtatattaatataatggactactgtacctggt 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 988
Length adjustment: 10
Effective length of query: 575
Effective length of database: 978
Effective search space:   562350
Effective search space used:   562350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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