NTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTCTTTGTCTTATTGACGGTGTTTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTCCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATT
GGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATT
GCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGGTCT
TTTATTCTTTGAGAAGAGTTTTGCTATCCAAGGTTTTTTGTTATTCCCGA

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGCCACAGATACAGGGGC
TGTGAAGAACATATCTCTGCCGGGGCTGAACTCACCTATCAACTCTTGGT
CTTTGTATTGTGTTCAGTTGTGTTTCTCTATGATGGTCTCCATTTGCTAG
AAAGAGAGGCTACTTTCGGATGAGGACTTTGAGTTTATAATTACCATGAA
AACCTTTCAGAGGTTTCAGATAAAATATATGAAAGGAAGAATACATTAAA
ATGTAAGATGACTGGATTTTAAATTCCAAAATGTAAATGAACTATATACA
AGCAAGGATCAGGCAGATAAACTAAATCACAAAAACCCTTCCTTGGCTCC
CTACAACAAAAGACTGCTTAATGATAGATGCCTGGTACACAATGAGAGGC
TTCAAGCATATCTTGAAGTGTCAGAGGATAGACTTTAGAAAATAATCTCC
TAACACTCCTCTGTGTGAAGAACTTTCTGGAAAACCATGATGTAAGGCAA
TAATATAGAAACAGCAAAGAGCTTGAGATGAAAATTTTAAGAGAACAATA
TGTAAGGAGAACAACGATGANCACACAAAGGATTGCTTGGCAGGAAAAGA
AAATGAAATTAAAGTGGTGTTGGATACAGTGGACACCTTGAGGAGTACAG
ACTACCTGGGAGCCCCATGGGGGGACATGAAGGAAAACGGGGCCCGGAAA
AAAAAA

Query= MSMg01no361_d14.g1 MSMg01no361_d14.g1 CHROMAT_FILE:
MSMg01no361_d14.g1 PHD_FILE: MSMg01no361_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:12 2005
         (504 letters)



>mm_chr1_52105629_52106532
          Length = 904

 Score =  959 bits (496), Expect = 0.0
 Identities = 502/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgagccacagatacaggggctgtgaagaacatatctctgccggggctgaactcaccta 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tctgagccacagatacaggggctgtgaagaacatatgtctgccggggctgaactcaccta 260

                                                                       
Query: 61  tcaactcttggtctttgtattgtgttcagttgtgtttctctatgatggtctccatttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaactcttggtctttgtattgtgttcagttgtgtttctctatgatggtctccatttgct 320

                                                                       
Query: 121 agaaagagaggctactttcggatgaggactttgagtttataattaccatgaaaacctttc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 agaaagagaggctactttcggatgaggactttgagtttataattaccatgaaaatctttc 380

                                                                       
Query: 181 agaggtttcagataaaatatatgaaaggaagaatacattaaaatgtaagatgactggatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaggtttcagataaaatatatgaaaggaagaatacattaaaatgtaagatgactggatt 440

                                                                       
Query: 241 ttaaattccaaaatgtaaatgaactatatacaagcaaggatcaggcagataaactaaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaattccaaaatgtaaatgaactatatacaagcaaggatcaggcagataaactaaatc 500

                                                                       
Query: 301 acaaaaacccttccttggctccctacaacaaaagactgcttaatgatagatgcctggtac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaaaacccttccttggctccctacaacaaaagactgcttaatgatagatgcctggtac 560

                                                                       
Query: 361 acaatgagaggcttcaagcatatcttgaagtgtcagaggatagactttagaaaataatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaatgagaggcttcaagcatatcttgaagtgtcagaggatagactttagaaaataatct 620

                                                                       
Query: 421 cctaacactcctctgtgtgaagaactttctggaaaaccatgatgtaaggcaataatatag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctaacactcctctgtgtgaagaactttctggaaaaccatgatgtaaggcaataatatag 680

                                   
Query: 481 aaacagcaaagagcttgagatgaa 504
           ||||||||||||||||||||||||
Sbjct: 681 aaacagcaaagagcttgagatgaa 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)