BAC Information

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BAC

Clone NameMSMg01-361G12
Chromosome1 (Build37)
Map Location 68,043,324 - 68,230,218
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneLancl1, Cps1, Kif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361G12.T7 (MSMg01no361_g12.b1)MSMg01-361G12.TJ (MSMg01no361_g12.g1)
ACCAG470345AG470346
length762769
length of high quality
(start - end)		554 (47 - 600)537 (76 - 612)
definitionCHROMAT_FILE: MSMg01no361_g12.b1 PHD_FILE: MSMg01no361_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:27 2005CHROMAT_FILE: MSMg01no361_g12.g1 PHD_FILE: MSMg01no361_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,043,324 - 68,043,873)(68,229,817 - 68,230,218)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGACTGACATAAGACAAACACAACATATTTCCTGAGGGAGCT
CCAGGAATAATTTGAGACATCAATCGTATCCACAACACTTTAACCTGGGG
ACACAATGGCTTCAGGTTTTGGTCTTTCATGCTACAAACTTTAAGTTAAA
GGCCACATTAGTTGTCTATGAACCTTCCTTATGCTTTCCTCTAAAGTTTG
GACCTTCAAGGTGTTAAAAAAGAGAAACTAACAGCAGCAAAAAGAACCCA
TAAACAGGTAGCCTACAGGGAGTGTGAAGATGACAAAGCCAGCTGTGAAG
AAGAGAACCTCGCATCCTGGTCTATCCGTTGATTGCCTTTGTTTGACTTT
TCTCTCCTTGCTGTCTCACAGTGTCTAAGAAATAGTGTTTCCTATTATTT
CCAGTCAAGTAAAATTTAGTTGCTTGTATCCTGACAGCTTAGCTCATTCG
ACTTCTCCTGCAAGTGAGCTATAAGCCCTTGCGGCAAGATGAAAAACAGG
AGTGAAAGTGGAGTGAGGACCTGAAAAACCCAGTCCTGGTTTTGTCCAGT
AATAATTTCAATGTTGTATACTCACTTAGCATTTATGCTATCCATTTATC
TCTTTTCACATAGTATTAGTAGCTCTATTGAAGGACCATCTTTCCTAAAA
TATCATATTTATTAATTGTCACATAATTCTTGCCTGATGAAATATATTGT
GAACAATAACTG

NCCATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAGATGCACAGAAAAGGGGGGAT
GGGATTGTTTGCATTCATATCAGAAACCAAGAAAAGCACCCTTACTCTGT
GACTCTACAGCTTTCACTAAAGACCAGAAGGGGAAAAAAAATCAGTAGTT
TCTCTGGATTGTTTTAGATAAAGAATGTCCAGAGAAGCCACCCAGCAGAG
ACTCCCTCAAATGCTCCAGCAGTTGGCACCGAGGAAGCTATTCCAGCAAC
CTGCAGGCCATGTGCTATGTTTGTCTTTTTGCCTAAGGCATTTGCCAATT
ATGTGTGCTATAAATGTACGCAGATCTCCCTTCCATAGGCAAAAGTCAAA
GACGTGAGCGATGCTTTCCTACGCTCCTGTTTATTAAAGAGAATGAAGAA
TTCTGTGTGGAATGAAAGCAATATTTTAAGCAGAATCCAAGAAAAATCAA
AAGAATCTAAGAGAATCGATCACCAGTTTCTAAAAATGTGGTTTCTGCTT
CTAGAAAGCGTTATGTTTGGGGTTATTTTATAGTTGCACATTGTAAATCT
CAGGTTCTTCACCTGTAACAATGTAATTCCGCTACTTATTAAAGGTACAG
CTGTAGACGTTAATATACTTGTGTTAGTTAATGAGCGCAAAGTGGGGGTT
TATTGATGGCTTTACATATGGAGAAAATCACTCTTGAGCTTCCCACTGGG
AACGTTGATGAAATTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_g12.b1 MSMg01no361_g12.b1 CHROMAT_FILE:
MSMg01no361_g12.b1 PHD_FILE: MSMg01no361_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:27 2005
         (554 letters)



>mm_chr1_68043120_68044073
          Length = 954

 Score = 1048 bits (542), Expect = 0.0
 Identities = 548/550 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgactgacataagacaaacacaacatatttcctgagggagctccaggaataa 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgacagaaataagacaaacacaacatatttcctgagggagctccaggaataa 264

                                                                       
Query: 65  tttgagacatcaatcgtatccacaacactttaacctggggacacaatggcttcaggtttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgagacatcaatcgtatccacaacactttaacctggggacacaatggcttcaggtttt 324

                                                                       
Query: 125 ggtctttcatgctacaaactttaagttaaaggccacattagttgtctatgaaccttcctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtctttcatgctacaaactttaagttaaaggccacattagttgtctatgaaccttcctt 384

                                                                       
Query: 185 atgctttcctctaaagtttggaccttcaaggtgttaaaaaagagaaactaacagcagcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgctttcctctaaagtttggaccttcaaggtgttaaaaaagagaaactaacagcagcaa 444

                                                                       
Query: 245 aaagaacccataaacaggtagcctacagggagtgtgaagatgacaaagccagctgtgaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagaacccataaacaggtagcctacagggagtgtgaagatgacaaagccagctgtgaag 504

                                                                       
Query: 305 aagagaacctcgcatcctggtctatccgttgattgcctttgtttgacttttctctccttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagagaacctcgcatcctggtctatccgttgattgcctttgtttgacttttctctccttg 564

                                                                       
Query: 365 ctgtctcacagtgtctaagaaatagtgtttcctattatttccagtcaagtaaaatttagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgtctcacagtgtctaagaaatagtgtttcctattatttccagtcaagtaaaatttagt 624

                                                                       
Query: 425 tgcttgtatcctgacagcttagctcattcgacttctcctgcaagtgagctataagccctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgcttgtatcctgacagcttagctcattcgacttctcctgcaagtgagctataagccctt 684

                                                                       
Query: 485 gcggcaagatgaaaaacaggagtgaaagtggagtgaggacctgaaaaacccagtcctggt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcggcaagatgaaaaacaggagtgaaagtggagtgaggacctgaaaaacccagtcctggt 744

                     
Query: 545 tttgtccagt 554
           ||||||||||
Sbjct: 745 tttgtccagt 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_g12.g1 MSMg01no361_g12.g1 CHROMAT_FILE:
MSMg01no361_g12.g1 PHD_FILE: MSMg01no361_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:27 2005
         (537 letters)



>mm_chr1_68229817_68230753
          Length = 937

 Score =  777 bits (402), Expect = 0.0
 Identities = 402/402 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtagatgcacagaaaaggggggatgggattgtttgcattcatatcagaaaccaagaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agtagatgcacagaaaaggggggatgggattgtttgcattcatatcagaaaccaagaaaa 343

                                                                       
Query: 61  gcacccttactctgtgactctacagctttcactaaagaccagaaggggaaaaaaaatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gcacccttactctgtgactctacagctttcactaaagaccagaaggggaaaaaaaatcag 283

                                                                       
Query: 121 tagtttctctggattgttttagataaagaatgtccagagaagccacccagcagagactcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tagtttctctggattgttttagataaagaatgtccagagaagccacccagcagagactcc 223

                                                                       
Query: 181 ctcaaatgctccagcagttggcaccgaggaagctattccagcaacctgcaggccatgtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ctcaaatgctccagcagttggcaccgaggaagctattccagcaacctgcaggccatgtgc 163

                                                                       
Query: 241 tatgtttgtctttttgcctaaggcatttgccaattatgtgtgctataaatgtacgcagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tatgtttgtctttttgcctaaggcatttgccaattatgtgtgctataaatgtacgcagat 103

                                                                       
Query: 301 ctcccttccataggcaaaagtcaaagacgtgagcgatgctttcctacgctcctgtttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 ctcccttccataggcaaaagtcaaagacgtgagcgatgctttcctacgctcctgtttatt 43

                                                     
Query: 361 aaagagaatgaagaattctgtgtggaatgaaagcaatatttt 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  aaagagaatgaagaattctgtgtggaatgaaagcaatatttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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