Query= MSMg01no361_j10.b1 MSMg01no361_j10.b1 CHROMAT_FILE:
MSMg01no361_j10.b1 PHD_FILE: MSMg01no361_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:40 2005
(631 letters)
>mm_chr1_81911956_81912986
Length = 1031
Score = 1042 bits (539), Expect = 0.0
Identities = 582/599 (97%), Gaps = 11/599 (1%)
Strand = Plus / Minus
Query: 41 ctgagagttcaatcatctaggcagaaggataaagaaatcaagtctcacgcca-ggcggtg 99
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct: 1031 ctgagagttcaatcatctaggcagaaggataaagaaatcaagtctcacg-cagggtggtg 973
Query: 100 gtggtgcatgcctttaatcctagcacttgggaggcagaggcgggcagatttctgagtttg 159
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 972 gtggtgcatgcctttaatcctagcacttgggaggcagaggcaggcagatttctgagtttg 913
Query: 160 aggccagcctggtctacaaagtgagtgccagtacagccaaggctacacagaaaagccctg 219
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 912 aggccagcctggtctacaaagtgagtgccagtacagccaaagctacacagaaaagccctg 853
Query: 220 tctcaaagaaaaaaa-----aaatcaagtctcc-agtggctttgatggaaatttggctgt 273
||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct: 852 tctcaaagaaaaaaaataataaatcaagtctccaag-ggctttgatggaaatttggctgt 794
Query: 274 tcactcacatggattcctccacttagacaagaagaatgtggaagtccttcagatccacaa 333
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 793 tcactcacatggattcctccacttagacaggaagaatgtggaagtccttcagatccacag 734
Query: 334 gtcccttaggggattcccagaggacaacagtctttaacaaacaaacaagcaaacaaaatt 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gtcccttaggggattcccagaggacaacagtctttaacaaacaaacaagcaaacaaaatt 674
Query: 394 aagattcagatgtcatgggagtctggcatcctagggaaagcactattaaagagacagcaa 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aagattcagatgtcatgggagtctggcatcctagggaaagcactattaaagagacagcaa 614
Query: 454 atatttcattcatgcaaatttttatgtgatttgtcaacaaacctatagcgaacaagttgg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 atatttcattcatgcaaatttttatgtgatttgtcaacaaacctatagcgaacaagttgg 554
Query: 514 aacaggggctacacc-tcttagcatactactgccttggaggctcaaaccttggactttcc 572
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aacaggggctacaccttc-tagcatactactgccttggaggctcaaaccttggactttcc 495
Query: 573 tcagaataagtcctttcatttccagagataaaaaatagtttatataatttttccttcat 631
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 494 tcagaataagtcctttcatttccagagataaaaaatagtttatataatttttcattcat 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_j10.g1 MSMg01no361_j10.g1 CHROMAT_FILE:
MSMg01no361_j10.g1 PHD_FILE: MSMg01no361_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:40 2005
(650 letters)
>mm_chr1_81760806_81761855
Length = 1050
Score = 1241 bits (642), Expect = 0.0
Identities = 650/654 (99%), Gaps = 4/654 (0%)
Strand = Plus / Plus
Query: 1 agaaacccaga---caacagtggatggagcttggggactcttatgaaagagttaggagta 57
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 agaaacccagagaccaacagtggatggagcttggggactcttatgaaagagttaggagta 256
Query: 58 ttgaaagccctgaaggagataagaactccatagtaaggccagtggaatcaactaacatgg 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttgaaagccctgaaggagataagaactccatagtaaggccagtggaatcaactaacatgg 316
Query: 118 acccttggggctctcagagactgaaccaccaatcaaagagcaaagcaaacatcagccaaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acccttggggctctcagagactgaaccaccaatcaaagagcaaagcaaacatcagccaaa 376
Query: 178 agtgcaggctggactgaggcctcccacacatatgtagcatatctgcagctctttcttcat 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agtgcaggctggactgaggcctcccacacatatgtagcatatctgcagctctttcttcat 436
Query: 238 gtgtgttccagacagctagagcagaggctatcctaaaacctgttccctgtctgtgggata 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtgtgttccagacagctagagcagaggctatcctaaaacctgttccctgtctgtgggata 496
Query: 298 tgttcttctagctaggctgccttttctggccttaggaggagaggatatgcctagacccat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgttcttctagctaggctgccttttctggccttaggaggagaggatatgcctagacccat 556
Query: 358 agagacttgatatgccagagtggagagataaccaaaaggggcctcaaacctctctgaaaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agagacttgatatgccagagtggagagataaccaaaaggggcctcaaacctctctgaaaa 616
Query: 418 gaaaaggaaggggatgtggaaaagatagtgggagggggtgaccgggaagcagtcagttat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaaaaggaaggggatgtggaaaagatagtgggagggggtgaccgggaagcagtcagttat 676
Query: 478 tgggatgtaaaatgaataaataaaaaa-taaaataaaaggttaggtaaactaattaagaa 536
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 677 tgggatgtaaaatgaataaataaaaaaataaaataaaaggttaggtaaactaattaagaa 736
Query: 537 ctacagatagaattattaactaaattatgcattattcataaatttacactggcatcccta 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ctacagatagaattattaactaaattatgcattattcataaatttacactggcatcccta 796
Query: 597 ctctaaacaaatttgatctttcatttgaagccatagcaaatttttactgtttcc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ctctaaacaaatttgatctttcatttgaagccatagcaaatttttactgtttcc 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
