BAC Information

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BAC

Clone NameMSMg01-362A07
Chromosome1 (Build37)
Map Location 125,258,909 - 125,259,450
singlet/doubletsinglet
Overlap geneDpp10
Upstream geneLOC666983
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362A07.T7 (MSMg01no362_a07.b1)MSMg01-362A07.TJ (MSMg01no362_a07.g1)
ACCAG470804AG470805
length1,339768
length of high quality
(start - end)		---546 (76 - 621)
definitionCHROMAT_FILE: MSMg01no362_a07.b1 PHD_FILE: MSMg01no362_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:14 2005CHROMAT_FILE: MSMg01no362_a07.g1 PHD_FILE: MSMg01no362_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCGAGAATATACATCAGACCATACGATAAANNTTGGGTGGCGATGTTGAT
ACGTAGAGGGAGGTACGGCGGGTAGACGGCCAGTGAGCTGACCTGCATCG
ACATTGATGACGAGCTCGCGTCACGATCATCCAAGTCGCGTGCTCTACTG
CTTATTCGGTTGTCGGGCTCGCCACTTACATTCCCGACCCGCGTATCGAG
CCACGGTNTTGCCCACCTATATGTCCGCGTCCCCGCGTTCGCGGTTGGTG
TTAAATGCCCGCTACCTCCTCCCTCACCCGCCAAGTACAGAAAGAACAAA
TAGAATAAAGACGCTTGTACATATTATCCGTNAAGTTACGATCAAGCGGA
CTATCCGCGCAGCGCTTTATCGGCGCGCCCATATATTTCGAGCGGGCCGG
CCCAGACCACCTTTTTACTATCTTTAGCCGCGCCTGTGCTCCGGCTGCCC
GTCCCCAGCTCCGCCTTTCCATGTTATAACTATGCCAGCTATTATTATAT
ATATGTGATCGGAGCAGTATATAGAGAGAGAGAAGCGTATGCGGAGTTAA
CGAGAGGAGACGTATGAGTCTGTTAGTTTATAAGCATAAGTGGCAATGCT
GGTCTTTATAGACGAGGTGGGGGTGGGGTGGAATGACAGTAGTGATCTTC
TGCGCGGTGGGAGCTCGGGCGCGGATGTCGCGCCGCACGCGGCAATCGAA
CTATATGAATACAGGTAACGAGTGCTCGAGTGCTTGACGTCTGAGTGNGA
GATATCGGCTGACGGGATCGAGTATAGTGACGCACACGATTGGTGTACCC
TATATTCTCNTTATTATGTCTACAGCACAGCGATGTTATCGACATGATAT
TTGCGAATGAAGAGTCGATGTAGTGTGTATTTGAGTAGTCGAGATGATTG
ATCTGTCATATCAGCTCTGAGCGAGCGACGAGTTACTGTATTATTACGAT
ACGGTTCGCGTGTCTTGTGTGAGTGTGNTCATCCGTCCGGGCGCGCTGAG
GACGTGCGTGGTATCTATCAGTACCACTATTCACCACATGCTGCCCGCCC
ACTTCTATAACAGATACATACCGATGTCGCCTCATGCTCTATCTAAGCCG
CTATTATATTCATAAATTCGAGCAGCCAACCACACCCACATTTATGCTAT
GACGTCGAGTCGACGTGCGCAAGATGTAGGAGAGGAGGAGGTAATTTAAT
TCCCGCGCGCGTGACGGGATGTGGTTCTATGTATAGTGTTAGAGGATGCG
CCGTGTTTGACGACGATAGATAAGTCGGCAGATAGTAGACGCGATGGGGA
GCTATGATGATATGACGTGCGTTGTGCGCCTCGGTCGGG

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGGAATAAAGAGTCTCACAGGCAA
TAATGAGAACTATAGTTCAGAAACAGAGCACCCAGATAAAATCCAAACTA
GTATTGTGGCCAGTCTGTAATCTCAGTTATCTTAGAATAGGAGACTGCAG
CCAGAATATTCCCTGGGACAAAGTACCTAGCTAGACTAAGGCAAAACTAC
AGTAAGAGAACTTTGAGGAAGAGAGTCATTGAGAATAAAAGTTGATGATA
ATCTTGGACATGTGCCCACACACAGGTGTACCTGTATGTACGTGAACATG
CCTATATATGTCACACAAAAATAAAGAATAAAGCATGCTATCTATACATT
TTTACAATGAAGTGTGTAGGTAAATAATGGCTACTGATGTTAATTCTTAT
TAGCTTCATAATGTAAGTTCAGTAGTAATATTGTAAAAAAAAAATGGTGC
AAAGATGTCTAAGGATCAATTTTCAGCATAATTCAGAAAATCTAAAGAAA
TGAGAAACTGATTCACCCAGAAGGTTAAATTTAAACATAAGTACTCAAAT
TGATTATGATCCTATCTTTTTCCAATTCACCTCATTCTTGAAAACTTTCA
TGGNTAAATGAATCATTCTTTTTTTACATTTTATTCCCTCACTCCTGCTT
TCTGTCAATATTCTTTGGGCATGGAAAAAAATGCAATTAATGTGGTGAGG
GACCTCGTTCCACAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_a07.g1 MSMg01no362_a07.g1 CHROMAT_FILE:
MSMg01no362_a07.g1 PHD_FILE: MSMg01no362_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:14 2005
         (546 letters)



>mm_chr1_125258709_125259652
          Length = 944

 Score =  955 bits (494), Expect = 0.0
 Identities = 531/544 (97%), Gaps = 2/544 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggaataaagagtctcacaggcaataatgagaactatagttcagaaacagagcacccag 60
           |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 201 agggaataaagagtctcacaggcaataatgagaactgtatttcagaaacagagcacccag 260

                                                                       
Query: 61  ataaaatccaaactagtattgtggccagtctgtaatctcagttatcttagaataggagac 120
           ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ataaaatccaaactagtattgtgaccagtctgtaatctcagttctcttagaataggagac 320

                                                                       
Query: 121 tgcagccagaatattccctgggacaaagtacctagctagactaaggcaaaactacagtaa 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggagccagaatattccctgggacaaagtacctagctagactaaggcaaaactacagtaa 380

                                                                       
Query: 181 gagaactttgaggaagagagtcattgagaataaaagttgatgataatcttggacatgtgc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 gagaactttgaggaagagagtcattgagaataaaagttgatgataatctttgacatgtgc 440

                                                                       
Query: 241 ccacacacaggtgtacctgtatgtacgtgaacatgcctatatatgtcacacaaaaataaa 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 441 ccacacacaggtgtacctgtatgtatgtgaacatgcctatatatgtcacacaaaagtaaa 500

                                                                       
Query: 301 gaataaagcatgctatctatacatttttacaatgaagtgtgtaggtaaataatggctact 360
           ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 501 gaataaagcatgctatctatacacttttacaatgaagtgtgtaagtaaataatggctact 560

                                                                       
Query: 361 gatgttaattcttattagcttcataatgtaagttcagtagtaatattgtaaaaaaaaaat 420
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |
Sbjct: 561 gatgttaattcttattagcttcataatgtaagttcagtagtagtattgtaaaaaaaa--t 618

                                                                       
Query: 421 ggtgcaaagatgtctaaggatcaattttcagcataattcagaaaatctaaagaaatgaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggtgcaaagatgtctaaggatcaattttcagcataattcagaaaatctaaagaaatgaga 678

                                                                       
Query: 481 aactgattcacccagaaggttaaatttaaacataagtactcaaattgattatgatcctat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aactgattcacccagaaggttaaatttaaacataagtactcaaattgattatgatcctat 738

               
Query: 541 cttt 544
           ||||
Sbjct: 739 cttt 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 944
Length adjustment: 10
Effective length of query: 536
Effective length of database: 934
Effective search space:   500624
Effective search space used:   500624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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