Query= MSMg01no362_a17.b1 MSMg01no362_a17.b1 CHROMAT_FILE:
MSMg01no362_a17.b1 PHD_FILE: MSMg01no362_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:16 2005
(614 letters)
>mm_chr1_41079960_41080973
Length = 1014
Score = 534 bits (276), Expect = e-156
Identities = 317/332 (95%), Gaps = 4/332 (1%)
Strand = Plus / Minus
Query: 287 agaacatgaaagagaaaaagagaaaagctaaaatagagcctggaactgtgaaagaactgt 346
|||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct: 1014 agaacatgaacgagaaaaagagaaaaactaaaatatagcctggaactgtgaaagaactat 955
Query: 347 aaaagcaaaacatacatacatacatacatacatacatacatacatacatacatacatact 406
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 954 aaaagcaatacatacatacatacatacatacatacatacatatatacatacatacatact 895
Query: 407 tacatagatacatgcatgcatgcat--a--catacatagatacctagatggtagatacac 462
||||||||||||||||||||||||| | |||| ||||||||||||||| |||||||||
Sbjct: 894 tacatagatacatgcatgcatgcatgcatgcatatatagatacctagatgatagatacac 835
Query: 463 agatagatggatggatagatcccagaacacaagaagcaacatgtacaataaatgtgggtg 522
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 834 agatagatggatggatagatcccagaacacaagaagcagcatgtacaataaatgtgggtg 775
Query: 523 tgtgcccaccataaaaatacatgcaagcatactaaagcttcagaaaatcaaaaataaagg 582
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tgtgcccaccataaaaatacatgcaagcatactaaagcttcagaaaatcaaaaataaaga 715
Query: 583 aacttgaaagaattctacagaaaataaaatac 614
||||||||||||||| ||||||||||||||||
Sbjct: 714 aacttgaaagaattcaacagaaaataaaatac 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_a17.g1 MSMg01no362_a17.g1 CHROMAT_FILE:
MSMg01no362_a17.g1 PHD_FILE: MSMg01no362_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:16 2005
(549 letters)
>mm_chr1_40914866_40915814
Length = 949
Score = 930 bits (481), Expect = 0.0
Identities = 532/549 (96%)
Strand = Plus / Plus
Query: 1 tcattgattgtctggaggaattaaatgtgtggagacttctcagcaacggtcagtaaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tcattgattgtctggaggaattaaatgtgtggagacttctcagcaactgtcagtaaaatg 260
Query: 61 gagggggaaaattacagaaagaacttggaaagacactgtcttatatattcaaaatcaagg 120
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tagggggaaaattacagaaagaacttgggaagacactgtcttatatattcaaaatcaagg 320
Query: 121 aggatagaggaagattttatgcctttcgtattattttttaattaattaattataaactcg 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 aggatagaggaagattttatgcctttcgtattatcttttaattaattaattataaactcg 380
Query: 181 agattttattcccttcctggcccaacctctgactgttccacaccccatacctcctccctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattttattcccttcctggcccaacctctgactgttccacaccccatacctcctccctg 440
Query: 241 ctcccctgtcttcacgaggatgcccccactccccaccttgctccaccagatctctaaact 300
|||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||
Sbjct: 441 ctcccctgtcttcacgaggatgtcaccactcctcaccctgctccaccagatctctaaaca 500
Query: 301 ccctggggcctctagtctcttgagggttaggtgcaacttctctgactaaacccagacctg 360
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 ccctggggcctccagtctcttgagggttaggtgcatcttctctgactaaacccagacctg 560
Query: 361 gtagtcctccgccatatatgtgttgaggggcctcatatcagctggcgtacctgcctggtt 420
| ||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||
Sbjct: 561 gcagtcctccgccatatatgtgttgaggggcctaatatcagctgacatacctgcctggtt 620
Query: 421 ggtggtctagtgcttgagagatctcaggggtccaagtttattgagactgctggtcctcct 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtggtctagtgcttgagagatctcaggggtccaagtttattgagactgctggtcctcct 680
Query: 481 acagggccgacctcctccttagcttcttccagctttcccctaattcaaccacaggggtca 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 acagggccgacctcctccttagcttcgtccagctttcccctaattcaaccacaggggtca 740
Query: 541 gcagcttct 549
|||||||||
Sbjct: 741 gcagcttct 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
