BAC Information

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BAC

Clone NameMSMg01-362E05
Chromosome1 (Build37)
Map Location 64,104,077 - 64,259,979
singlet/doubletdoublet
Overlap geneKlf7, Ppia-ps1_583.1
Upstream geneA430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918
Downstream geneLOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362E05.T7 (MSMg01no362_e05.b1)MSMg01-362E05.TJ (MSMg01no362_e05.g1)
ACCAG470991AG470992
length762780
length of high quality
(start - end)		515 (44 - 558)473 (72 - 544)
definitionCHROMAT_FILE: MSMg01no362_e05.b1 PHD_FILE: MSMg01no362_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:34 2005CHROMAT_FILE: MSMg01no362_e05.g1 PHD_FILE: MSMg01no362_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,259,468 - 64,259,979)(64,104,077 - 64,104,549)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGATGCTTACTACCCTGGTGGCTCATCGTGTGTATCACTGGGGCTAT
GGAGCATCAAGGAGCTTAGAAGGTGACTGGGTTAAGAGCAGTTGGAGTGG
GGCTTGGAATTAACTGTCAGCTACTCAAAGGAAAAAGGGGCAAGAGCTTC
AAATACAAAATTTCATAATCCACTGTATGCTCTGTGAGTTACTACTGCCC
CAAGGAGGGCAAAGGGCATCTGCATGCTTGCCAGCTTCAGAAACGTCAGA
AAGGTTCTTGCCCTTTTTCTCTGCTGTAAATATTCTGCATAATTGTCATG
GCCTTCGTGCTGGGTCCATGATGCCAGCTTGCTCCCCAGGCTCCACTGCC
AGCTCCTTCTCAACTATTCAACCTGGATATGCAGGTGTATCCCAGGTCTC
TGTCCTGGGTTTCTGTCTCTTTTAGTTGTCTCTGGTGACCTCATCCAGTC
TAGAGTTTATCACCTTCATGCCTGGGATCTCTCATACCCAGGCTCTAAAT
CTATTCCTCTAGTAGTAACCCTTTCCAGATCAAGAAGCCTGCGTTGCCCA
CACCATAATTGGTCTCTACCTCTTGCACAGTAAATCACATGGCCGAACGG
CCATCCTGTGGCTACCGTAAATATGCCGATTATTCCCCCCCCAACTGTTT
TCTATTCCTCATCCGGTCTCCCCCAACTGCTGCCCCCCCTTCTGTATCTA
CTTCCCCCCCCN

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTCCCCTCAACTAAATGGAGCTAATTTC
TTGTCTGGCATCAGTCTCACAGGCCTGTTATGAAGTACAGAGAAATGGTG
AAGATGCCTAGAGACCAGTGTGAAGGGTCTCTAGATGACAAGTCCTGAGA
CTAGTGTTTCATTCAATAGAGATGCTCTTCCATATCCCAGCTCTTAAACA
CATGATGTGGTGCTGGTTACAGAAGCAAAGGGTTTGGGCCCTACAACATA
ACCTCAATATTGCATTTATAAATACAGCCCAAAGTCTAAACACCACTTAA
CTATGGTGTGTAACTCATCGATGTCACATAATTCATTCAGTGAAATGTGC
CTCCCTTTTCTAGATGTCTATAATATTGCCTGATACATCTAGGCATCTAT
CCTAGGGGGAGAGAGAGCGAAGGAGAAAAATGAGAATGAATGTGGGGGAG
AAGAACAAAATGTTCACCTAGACAAGTTTAACAGTTAAATGCATCTCTGC
AGAGACATCTTGAACAAGTGTCCTGATTCTACCTCTTCTTAACGGCTGCT
CGTGTTTTACAAATCATGGTGGTATGGGTCGCACATTTATATTCCTTCCT
CTATGCCCCTTTTTAATACTGGATCCCCTAAGGACCTTGAGTTGCTTTAA
TGGAAATTTTGGTCTTTTACCCTCCTCATAAACCCCCCCGCGTTATTAGC
GTCCCCTTTTTTTCTTTTTCGATTCTAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_e05.b1 MSMg01no362_e05.b1 CHROMAT_FILE:
MSMg01no362_e05.b1 PHD_FILE: MSMg01no362_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:34 2005
         (515 letters)



>mm_chr1_64259442_64260356
          Length = 915

 Score =  944 bits (488), Expect = 0.0
 Identities = 506/512 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagatgcttactaccctggtggctcatcgtgtgtatcactggggctatggagca 63
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggaattcagatgcccactaccctggtggctcatcgtgtgtatcactggggctatggagca 479

                                                                       
Query: 64  tcaaggagcttagaaggtgactgggttaagagcagttggagtggggcttggaattaactg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcaaggagcttagaaggtgactgggttaagagcagttggagtggggcttggaattaactg 419

                                                                       
Query: 124 tcagctactcaaaggaaaaaggggcaagagcttcaaatacaaaatttcataatccactgt 183
           |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 418 tcagctactcaaaggagaaaggggcaagagcttcaaatacaaaatttcataattcactgt 359

                                                                       
Query: 184 atgctctgtgagttactactgccccaaggagggcaaagggcatctgcatgcttgccagct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atgctctgtgagttactactgccccaaggagggcaaagggcatctgcatgcttgccagct 299

                                                                       
Query: 244 tcagaaacgtcagaaaggttcttgccctttttctctgctgtaaatattctgcataattgt 303
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 298 tcagaaacgtcagaaaggttcttgccctttttctctgctgtaagtattctgcataattgt 239

                                                                       
Query: 304 catggccttcgtgctgggtccatgatgccagcttgctccccaggctccactgccagctcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 catggccttcgtgctgggtccatgatgccagcttgctccccaggctccactgccagctcc 179

                                                                       
Query: 364 ttctcaactattcaacctggatatgcaggtgtatcccaggtctctgtcctgggtttctgt 423
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 178 ttctcaactattcaacctggatatacaggtgtatcccaggtctctgtcctgggtttctgt 119

                                                                       
Query: 424 ctcttttagttgtctctggtgacctcatccagtctagagtttatcaccttcatgcctggg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ctcttttagttgtctctggtgacctcatccagtctagagtttatcaccttcatgcctggg 59

                                           
Query: 484 atctctcatacccaggctctaaatctattcct 515
           ||||||||||||||||||||||||||||||||
Sbjct: 58  atctctcatacccaggctctaaatctattcct 27


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_e05.g1 MSMg01no362_e05.g1 CHROMAT_FILE:
MSMg01no362_e05.g1 PHD_FILE: MSMg01no362_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:34 2005
         (473 letters)



>mm_chr1_64103877_64104749
          Length = 873

 Score =  907 bits (469), Expect = 0.0
 Identities = 472/473 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcccctcaactaaatggagctaatttcttgtctggcatcagtctcacaggcctgttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcccctcaactaaatggagctaatttcttgtctggcatcagtctcacaggcctgttat 260

                                                                       
Query: 61  gaagtacagagaaatggtgaagatgcctagagaccagtgtgaagggtctctagatgacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtacagagaaatggtgaagatgcctagagaccagtgtgaagggtctctagatgacaa 320

                                                                       
Query: 121 gtcctgagactagtgtttcattcaatagagatgctcttccatatcccagctcttaaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gtcctgagactagtgtttcattcaatagagatgctcttccatatccccgctcttaaacac 380

                                                                       
Query: 181 atgatgtggtgctggttacagaagcaaagggtttgggccctacaacataacctcaatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgatgtggtgctggttacagaagcaaagggtttgggccctacaacataacctcaatatt 440

                                                                       
Query: 241 gcatttataaatacagcccaaagtctaaacaccacttaactatggtgtgtaactcatcga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatttataaatacagcccaaagtctaaacaccacttaactatggtgtgtaactcatcga 500

                                                                       
Query: 301 tgtcacataattcattcagtgaaatgtgcctcccttttctagatgtctataatattgcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtcacataattcattcagtgaaatgtgcctcccttttctagatgtctataatattgcct 560

                                                                       
Query: 361 gatacatctaggcatctatcctagggggagagagagcgaaggagaaaaatgagaatgaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatacatctaggcatctatcctagggggagagagagcgaaggagaaaaatgagaatgaat 620

                                                                
Query: 421 gtgggggagaagaacaaaatgttcacctagacaagtttaacagttaaatgcat 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgggggagaagaacaaaatgttcacctagacaagtttaacagttaaatgcat 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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