Query= MSMg01no362_i22.b1 MSMg01no362_i22.b1 CHROMAT_FILE:
MSMg01no362_i22.b1 PHD_FILE: MSMg01no362_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:58 2005
(502 letters)
>mm_chr1_56788947_56789847
Length = 901
Score = 932 bits (482), Expect = 0.0
Identities = 494/498 (99%), Gaps = 1/498 (0%)
Strand = Plus / Plus
Query: 5 gaattcattaatgtcaaacaaaggtttaaatgaatggatttatccttgccctgaatgctt 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaatggcaaacaaaggtttaaatgaatggatttatccttgccctgaatgctt 264
Query: 65 ttaattttacaatcccactacagcctagtgctcattgtacctttcttttgaaactgtctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaattttacaatcccactacagcctagtgctcattgtacctttcttttgaaactgtctt 324
Query: 125 gtttctaatagaaaaatatttaatcttttccattattttctattatatttgttagcttga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttctaatagaaaaatatttaatcttttccattattttctattatatttgttagcttga 384
Query: 185 acttctttcccaccctctattgacaatacactacccatatcttgcaaagactaataattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 acttctttcccaccctctattgacaatacactacccatatcttgcaaagactaatgattt 444
Query: 245 tttaaaagtctttcattacctttttatgtgcatttttaatttttgtgtacaagagtcaag 304
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttaaaagtctttcatt-cctttttatgtgcatttttaatttttgtgtacaagagtcaag 503
Query: 305 attcctgcgaggtttgctggtacatttctattattgtgttttagtgagaactcttttatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attcctgcgaggtttgctggtacatttctattattgtgttttagtgagaactcttttatt 563
Query: 365 ttatttttatccaaaaatatgtatatttaagatcagaatcaacacacaaatccttctttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 564 ttatttttatccaaaaatatgtatatttaagatcagaatcaacacacaaatccctctttt 623
Query: 425 ctgcatatattatgaatgtttggcagactataacccaattgaaattctaacatgaattca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgcatatattatgaatgtttggcagactataacccaattgaaattctaacatgaattca 683
Query: 485 atagctagtgaccattgt 502
||||||||||||||||||
Sbjct: 684 atagctagtgaccattgt 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 901
Length adjustment: 10
Effective length of query: 492
Effective length of database: 891
Effective search space: 438372
Effective search space used: 438372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_i22.g1 MSMg01no362_i22.g1 CHROMAT_FILE:
MSMg01no362_i22.g1 PHD_FILE: MSMg01no362_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:58 2005
(487 letters)
>mm_chr1_56982561_56983447
Length = 887
Score = 888 bits (459), Expect = 0.0
Identities = 480/487 (98%)
Strand = Plus / Minus
Query: 1 agcctcttttctctagctcttgtgctcacaggcatataaaaacacacaaatagagggcac 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 687 agcctcttttctctagctcttgtgctcacaggcatataaaaacagacaaatagagggcac 628
Query: 61 atcagtacacttgactgcccctgggtagcatatttcagtcctctcaatagctaaggggtt 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atcagtacacttgattgcccctgggtagcatatttcagtcctctcaatagctaaggggtt 568
Query: 121 aaattttgagtgagcatatgatggcaaagacagaaaagagcaatttttccccctaaacat 180
|||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||
Sbjct: 567 aaattttgagtgagcatatgatggcaaagacataaacgagcattttttccccctaaacat 508
Query: 181 aaagaacgacttggaaagaagtctgtcggggtggccaaggcaaggaggctccctcagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaagaacgacttggaaagaagtctgtcggggtggccaaggcaaggaggctccctcagaat 448
Query: 241 ggaaagaggtctgtggaagcggagagtaagtgattcaatatgattggaatttgatccata 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggaaagaggtctgtggaagtggagagtaagtgattcaatatgattggaatttgatccata 388
Query: 301 gtaatatggatcaagtgagatctttatcataggaagaaagaaactactcaagattcataa 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtaatatggctcaagtgagatctttatcataggaagaaagaaactactcaagattcataa 328
Query: 361 atgccatttattagcaactactacttgggcttctttaattagaaggagtcttcaggcctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atgccatttattagcaactactacttgggcttctttaattagaaggagtcttcaggcctc 268
Query: 421 tgaggtcactaatggagctttggaggtgagaggacaaaggacttttatgattaagaaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgaggtcactaatggagctttggaggtgagaggacaaaggacttttatgattaagaaaaa 208
Query: 481 tctaaaa 487
|||||||
Sbjct: 207 tctaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
