BAC Information

Click to search

BAC

Clone NameMSMg01-362K18
Chromosome1 (Build37)
Map Location 160,579,516 - 160,580,017
singlet/doubletsinglet
Overlap geneAstn1
Upstream gene6430517E21Rik
Downstream genePappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362K18.T7 (MSMg01no362_k18.b1)MSMg01-362K18.TJ (MSMg01no362_k18.g1)
ACCAG471301AG471302
length754750
length of high quality
(start - end)		507 (50 - 556)392 (80 - 471)
definitionCHROMAT_FILE: MSMg01no362_k18.b1 PHD_FILE: MSMg01no362_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:08 2005CHROMAT_FILE: MSMg01no362_k18.g1 PHD_FILE: MSMg01no362_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACCGCTTCCATGCCAAAGCTGACTAACAGCTTTTGGCAAAA
ACTGAATACTGTACCTACATCAAATCTAAATTTAACATGAACCTAATTAG
CTAGGGACCTCAAGCCGACACTGATTTGTTAGAAAACAAGCCCACGAAAA
GGGGATTAGCTTAAGAAATTATAACATTGTGTTATCTATCAATTTTTAAA
AGGCATTGGGGCATTGATGCCATTTTATTTCTGTCTCCTCTAACTTCCAA
ATCTGCATAGTCATAATTGATGAACAAAAACATCACCTGGAGGCACTTGG
GGGAAAGGTTTAATTCTGTTTGGTAGGCAATGCTTTATGAAGCAGGCAGG
AAATTGGAACACTGCATTTTTAGAAAAGAAAAATGTCAACAAGGACTGCA
GAAAAAGTAAGCATTTTTTTTTTCTGGGTAAGTGTCAATTAAACAAAAAT
CTGCTTCCAGAAGACATCGTTCCTTGGGTACCCCAGCTGTTGGCACTTTA
TGAAGTGGTCAGTGGGCATCTGATGACAGATACTCCACCACAGCCTTGGA
TATTGCTCTCCAGGGACTGGCTGCAGGGTCTGAAGATAGCAAAGAGGCCC
TATCTCTAGATATTTTCTGATGAAATATCAAAGGACTGAGTCTGAAATGG
ACTAAGATATTAATGTTAAAACACAAGAAGGCTACCCCCCTGAAAAAAAA
TTTN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCGAGGCAAACCTCATCT
ACAGAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCA
AACAAAACAAAACAAAACAAAACAAAAACAACAACAACAAAAAAGACTGG
ATGAACCCAGTAGGAGGAGAAGGGTTCCAAGAGCAGGCAAATGAGTCAAA
GAGACTCCCATTCCCACTGTAAGGAGTCCCACAAAAACACTACAAAACAA
CCAGAACGTGGCAGGGAATCTAGCACAGACCCATAGCCTCATGCAGGCTC
CGTGATTGTCGCTTCACTTTCTGAGCCCCTATGAGCCCTGCTTAGTTGAT
TCTGTGGGTCTGTGGGCTATGAACTCAAATATGGTGTTTTGGTTTTGGGC
TTTTGGGGGGGTTGTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNN
NNNNNNNNNNNNNGNNNNNNTNTGNNNTNNNNNNNNTNNTTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTGTTTTNTTGGTT
TTTTTTNTTNTTTTTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTN
NTNTTTTTTTTTNNNTTTTTTTTTTTTTTTTTTTTTTNNTTTNTTTTTTT
TTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_k18.b1 MSMg01no362_k18.b1 CHROMAT_FILE:
MSMg01no362_k18.b1 PHD_FILE: MSMg01no362_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:08 2005
         (507 letters)



>mm_chr1_160579312_160580217
          Length = 906

 Score =  949 bits (491), Expect = 0.0
 Identities = 500/503 (99%), Gaps = 1/503 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccgcttccatgccaaagctgactaacagcttttggcaaaaactgaatactgta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccgcttccatgccaaagctgactaacagcttttggcaaaaactgaatactgta 264

                                                                       
Query: 65  cctacatcaaatctaaatttaacatgaacctaattagctagggacctcaagccgacactg 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 265 cctacatcaaatctaaatttaacacgaacctaattagctagggacctcaagcccacactg 324

                                                                       
Query: 125 atttgttagaaaacaagcccacgaaaaggggattagcttaagaaattataacattgtgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttgttagaaaacaagcccacgaaaaggggattagcttaagaaattataacattgtgtt 384

                                                                       
Query: 185 atctatcaatttttaaaaggcattggggcattgatgccattttatttctgtctcctctaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctatcaatttttaaaaggcattggggcattgatgccattttatttctgtctcctctaa 444

                                                                       
Query: 245 cttccaaatctgcatagtcataattgatgaacaaaaacatcacctggaggcacttggggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttccaaatctgcatagtcataattgatgaacaaaaacatcacctggaggcacttggggg 504

                                                                       
Query: 305 aaaggtttaattctgtttggtaggcaatgctttatgaagcaggcaggaaattggaacact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaggtttaattctgtttggtaggcaatgctttatgaagcaggcaggaaattggaacact 564

                                                                       
Query: 365 gcatttttagaaaagaaaaatgtcaacaaggactgcagaaaaagtaagcatttttttttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 565 gcatttttagaaaagaaaaatgtcaacaaggactgcagaaaaagtaagcattttttttt- 623

                                                                       
Query: 425 ctgggtaagtgtcaattaaacaaaaatctgcttccagaagacatcgttccttgggtaccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgggtaagtgtcaattaaacaaaaatctgcttccagaagacatcgttccttgggtaccc 683

                                  
Query: 485 cagctgttggcactttatgaagt 507
           |||||||||||||||||||||||
Sbjct: 684 cagctgttggcactttatgaagt 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 906
Length adjustment: 10
Effective length of query: 497
Effective length of database: 896
Effective search space:   445312
Effective search space used:   445312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |