Query= MSMg01no362_m15.b1 MSMg01no362_m15.b1 CHROMAT_FILE:
MSMg01no362_m15.b1 PHD_FILE: MSMg01no362_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:17 2005
(474 letters)
>mm_chr1_19872504_19873377
Length = 874
Score = 909 bits (470), Expect = 0.0
Identities = 473/474 (99%)
Strand = Plus / Plus
Query: 1 atggaatagcactcagcattcattgaaggaaaaataaaataagcatgagacacatccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggaatagcactcagcattcattgaaggaaaaataaaataagcatgagacacatccaag 260
Query: 61 aaaatatggtgccaagctaatagacaccaggcatcaaatatacataacaattaattaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatatggtgccaagctaatagacaccaggcatcaaatatacataacaattaattaagg 320
Query: 121 caatcaacagattgggaaaatatctttaccaatcctaaatccaatagcgggctaatatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatcaacagattgggaaaatatctttaccaatcctaaatccaatagcgggctaatatcc 380
Query: 181 aatatatataaagaactcaaaatgttggactccagaaaactaaataaccctattaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatatatataaagaactcaaaatgttggactccagaaaactaaataaccctattaaaaaa 440
Query: 241 aggggtacagagctaaacaaagaattctcaactgaggaataccaaatggttgagaagcgc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 aggggtacagagctaaacaaagaattctcaactgaggaataccaaatggttgagaagcac 500
Query: 301 ctaaaaaatgtttaacatccttaatcatcatggaaatgcaaatcaaaacaaccctgagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaaaaaatgtttaacatccttaatcatcatggaaatgcaaatcaaaacaaccctgagat 560
Query: 361 tccacctcacaccagtcagaatggctaagtatatataaagaacgcaagaaggtggactcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccacctcacaccagtcagaatggctaagtatatataaagaacgcaagaaggtggactcc 620
Query: 421 agaaaaacaacattatgaactaaccagtaccccggagctcttgactctagctgc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaaaacaacattatgaactaaccagtaccccggagctcttgactctagctgc 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_m15.g1 MSMg01no362_m15.g1 CHROMAT_FILE:
MSMg01no362_m15.g1 PHD_FILE: MSMg01no362_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:17 2005
(524 letters)
>mm_chr1_20041192_20042119
Length = 928
Score = 994 bits (514), Expect = 0.0
Identities = 523/528 (99%), Gaps = 4/528 (0%)
Strand = Plus / Minus
Query: 1 atgaactcttaggcaaatgaaggcatccatctctattcaaacaaaagaatacttaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 atgaactcttaggcaaatgaaggcatccatctctattcaaacaaaagaatacttaagtgc 669
Query: 61 actgaattatcacatttgtctgcctcccacaaagccttatgacatgagaatatgaagcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 actgaattatcacatttgtctgcctcccacaaagccttatgacatgagaatatgaagcaa 609
Query: 121 agttatggatgacagtcagtctgtaaagagaatttccacaatttccagtggaaatgtcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 agttatggatgacagtcagtctgtaaagagaatttccacaatttccagtggaaatgtcag 549
Query: 181 attttccaagagtataaaccaggattttccaatctcatcatgactaaggagctattctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 attttccaagagtataaaccaggattttccaatctcatcatgactaaggagctattctgt 489
Query: 241 gattgagacagaacacagacaagcaacagttgtcttctactcctaactctcaaataattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gattgagacagaacacagacaagcaacagttgtcttctactcctaactctcaaataattg 429
Query: 301 cagcttagaaactgaatccataggaagtattggtagaaagtaggcatcaactggaaagct 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cagcttagaaactgaatccaaaggaagtattggtagaaagtaggcatcaactggaaagct 369
Query: 361 taacttttcccactgtgagttgaccatagctatctcagcctctttcctctttaaacattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 taacttttcccactgtgagttgaccatagctatctcagcctctttcctctttaaacattt 309
Query: 421 gtgaagtatctcataaaactcccagtttctaagattac----tttggaggtggagaccct 476
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 308 gtgaagtatctcataaaactcccagtttctaagattactttgtttggaggtggagaccct 249
Query: 477 tccctgtggctctgtactgacttctgagtgcaggaacgatgctactga 524
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tccctgtggctctgtactgacttctgagtgcaggaacgatgctactga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 928
Length adjustment: 10
Effective length of query: 514
Effective length of database: 918
Effective search space: 471852
Effective search space used: 471852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
