Query= MSMg01no362_m20.b1 MSMg01no362_m20.b1 CHROMAT_FILE:
MSMg01no362_m20.b1 PHD_FILE: MSMg01no362_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:18 2005
(464 letters)
>mm_chr1_140136128_140136990
Length = 863
Score = 659 bits (341), Expect = 0.0
Identities = 384/411 (93%), Gaps = 22/411 (5%)
Strand = Plus / Minus
Query: 76 ctgctggtatttactttggcatcacaatcagggtccatactcgatctgaaatccttttta 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ctgctggtatttactttggcatcacaatcagggtccatactcgatctgaaatccttttta 804
Query: 136 atttgcacagcattctattgtttcctttagtggtgttttcttgtctcttcctcctcctct 195
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 803 atttgcacagcattctattgtttcctttagtgttgttttcttgcctcttcctcctcctct 744
Query: 196 tcctcaacctcctccttctcttccttcccccactcttcctcctccctcctctttttattc 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcctcaacctcctccttctcttccttcccccactcttcctcctccctcctctttttattc 684
Query: 256 atttcactgttttatttag--------------------tagacttcttcattaccaagt 295
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 683 atttcactgttttatttagtttcatttcactgttttatttagacttcttcattaccaagt 624
Query: 296 ttttttt-tccgctcattttat-gggatgcttatcattttaagttttcatagagtctgat 353
||||||| ||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 623 tttttttccccgttccttttatggggatgcttatcattttaagttttcatagagtctgat 564
Query: 354 ttagcattttaaattaatttgtgttttatgtcatgtttcagaatatgattcctgaccttg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttagcattttaaattaatttgtgttttatgtcatgtttcagaatatgattcctgaccttg 504
Query: 414 acatgaaagatattctttgacatttttcctttttcaagtttttatgagagc 464
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acatgaaagatattctttgacatttttcctttttcaagtttttatgagagc 453
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space: 387262
Effective search space used: 387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_m20.g1 MSMg01no362_m20.g1 CHROMAT_FILE:
MSMg01no362_m20.g1 PHD_FILE: MSMg01no362_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:18 2005
(401 letters)
>mm_chr1_140050663_140051463
Length = 801
Score = 741 bits (383), Expect = 0.0
Identities = 398/405 (98%), Gaps = 4/405 (0%)
Strand = Plus / Plus
Query: 1 aactgggtacagaagggagcaggtgtactcagcagggctcaggcccaggtactgcagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aactgggtacagaagggagcaggtgtactcagcagggctcaggcccaggtactgcagaat 256
Query: 61 tacacaaaggaagtaggctaagttcagtcttgcctgcagagccattgtattgccagagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tacacaaaggaagtaggctaagttcagtcttgcctgcagagccattgtattgccagagtg 316
Query: 121 tcttcattcatgggtaaggtgatcctgggcacaggagtctgtcacacttcccaagtgcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcttcattcatgggtaaggtgatcctgggcacaggagtctgtcacacttcccaagtgcag 376
Query: 181 agaagcaggaagtaggacacaggtgttctctctctctctctctctctctctctctctctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agaagcaggaagtaggacacaggtgttctctctctctctctctctctctctctctctctc 436
Query: 241 tctctctctctcac----acacacacacacacacacacacacacacacaccccttggcaa 296
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tctctctctctctctctcacacacacacacacacacacacacacacacaccccttggcaa 496
Query: 297 acagttcttgctgtggtcagaggccaggctcgctcaagctgtctgccacaagtgtgcaca 356
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 497 acagttcttgctgtggtcagaggccaggctcactcaagctgtctgccacaagtgtgcaca 556
Query: 357 atgttcaagttgcccagcgacgccagctgtacagtgggagtggtt 401
|||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 557 atgttcaagttgcccagcgatgccagctgtacagtgggagtggtt 601
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
