BAC Information

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BAC

Clone NameMSMg01-362M22
Chromosome1 (Build37)
Map Location 91,459,513 - 91,593,032
singlet/doubletdoublet
Overlap geneCentg2
Upstream geneArl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688
Downstream geneGbx2, Asb18, Iqca, Cxcr7, Cops8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362M22.T7 (MSMg01no362_m22.b1)MSMg01-362M22.TJ (MSMg01no362_m22.g1)
ACCAG471405AG471406
length774776
length of high quality
(start - end)		471 (48 - 518)437 (78 - 514)
definitionCHROMAT_FILE: MSMg01no362_m22.b1 PHD_FILE: MSMg01no362_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:18 2005CHROMAT_FILE: MSMg01no362_m22.g1 PHD_FILE: MSMg01no362_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,592,566 - 91,593,032)(91,459,513 - 91,459,949)
sequence
NTCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGCCTCGACTTCCCTTAGTAACCTGGAATTCAGGATGGACTG
GAAACTGAGGTAGGAGGACAGAGTTATAGCCCACGCATAGGAGCTGTGAG
GGCAGCTGACTTATAGAAGATGCAGCTAGGAAGACTTATGAGCCACAGTC
TGTCATGTACAGACAACCAAAAGCTGCAAGAGGGTCTCCAACAGAAGAGG
CTTCCCATTAGTGAAGAAAAGACACAACAGCCACACAGAAGCTAAGTATT
CATTTGTGGCCCATGGTCATGTTCTAGGAGGGATGTTACAAGCATAGAGC
CAGATTTTATATGCTGCTTCTGACCTATACAGTGCAAGGAACCTGTACTC
CCTGGACAACAATCCCAAGTGGCTCTAGAAAGAGGAGACAGGTCTGAAAT
GAGACACCTCTGATTCAGGGTAGAGAGGAGGTCCCCAGGTATACTGTCTG
GAGCTGGACAGGATGACAGTAAGGAGGCGGCAGCAGCAGCAGCAGCAGCA
CAAGAACACTTCTTAACTGAGAGGGGACTTCATGTTCTCCGCTTGCGAGC
TCAGAGGGTTATGGGGGGATGTTTGAGGAACACCAAAATGTCTCGCGTTG
AAACTGGGATGGGTCCCCCAAACAAGCTGGGCTCCCACCGGGATTTCTGA
AGCCGAAGGTTAAAAATAGTCTTGTGCCTCGCTCTCTTCCAAATATGGGA
GCCTCCTGGCCGGCTTGACTTTAT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCACAAGGGCATACCTAAGG
ACATTGCAAGGTAGCCCTTTGCTGGTAAGCAGCCAGCTGTTCCTCCACCC
ACTCCTTTCTCCGAGGCATCTGCATCTGTTAGTTAAGAACATGTTCTCCA
TTGGCTCTGGGCAGGGGCTCTCACTGTGGCCTGAGTGCTTTCAAGGCCTG
GGGTCTTATAAACTCACATACTTGCCTCCTTCCTGCTCTGTTCAGGGTTC
CTTGGCACATTGGGCACAGGGGGAAAAAAAAGGAAGAAGAAAAAGAAAGA
AAAGAAGTACTAATTTTCTGAATAGGAAAAGTGCGGTTTTCCAGATTACA
AACCTGAGCTGAGCTTGAAGTGAGTGAAGGTGCAGAAGAATGTGTTCACG
GACAGTGTCCTGGGCAGAGCCGGGGGCATGCTGCAGAAGTGAGGGCGGGG
GCTGCAGCCATCTCACCTTGACCACCCGTCTCTCATCGGGAGCTGAGCAG
GGTCTGGCTCCGCCAGTACATGGAAAAGAAACTTCCTGAAAGTAAATGCC
CGGTGCTGTTGGCTTTATAAAAAAAAAAATGGGAGGTTGGGGTCCATACA
GGTTGCCGGGAAAAAAACCTTTTTTATTAATCCAAAAAATTCGTTGTAAT
AATAGTAAAGCCACCTTTTTGATGTATCTTCTGAAGGTTTTTGTACAATT
GTAAACCCTCCTTCTCTTTCGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_m22.b1 MSMg01no362_m22.b1 CHROMAT_FILE:
MSMg01no362_m22.b1 PHD_FILE: MSMg01no362_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:18 2005
         (471 letters)



>mm_chr1_91592362_91593232
          Length = 871

 Score =  895 bits (463), Expect = 0.0
 Identities = 466/467 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgcctcgacttcccttagtaacctggaattcaggatggactggaaactgaggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gaattcctgcctcgacttcccttagtaacctggaattcaggatggactggaaactgaggt 612

                                                                       
Query: 65  aggaggacagagttatagcccacgcataggagctgtgagggcagctgacttatagaagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aggaggacagagttatagcccacgcataggagctgtgagggcagctgacttatagaagat 552

                                                                       
Query: 125 gcagctaggaagacttatgagccacagtctgtcatgtacagacaaccaaaagctgcaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gcagctaggaagacttatgagccacagtctgtcatgtacagacaaccaaaagctgcaaga 492

                                                                       
Query: 185 gggtctccaacagaagaggcttcccattagtgaagaaaagacacaacagccacacagaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gggtctccaacagaagaggcttcccattagtgaagaaaagacacaacagccacacagaag 432

                                                                       
Query: 245 ctaagtattcatttgtggcccatggtcatgttctaggagggatgttacaagcatagagcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctaagtattcatttgtggcccatggtcatgttctaggagggatgttacaagcatagagcc 372

                                                                       
Query: 305 agattttatatgctgcttctgacctatacagtgcaaggaacctgtactccctggacaaca 364
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agattctatatgctgcttctgacctatacagtgcaaggaacctgtactccctggacaaca 312

                                                                       
Query: 365 atcccaagtggctctagaaagaggagacaggtctgaaatgagacacctctgattcagggt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atcccaagtggctctagaaagaggagacaggtctgaaatgagacacctctgattcagggt 252

                                                          
Query: 425 agagaggaggtccccaggtatactgtctggagctggacaggatgaca 471
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agagaggaggtccccaggtatactgtctggagctggacaggatgaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_m22.g1 MSMg01no362_m22.g1 CHROMAT_FILE:
MSMg01no362_m22.g1 PHD_FILE: MSMg01no362_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:18 2005
         (437 letters)



>mm_chr1_91459313_91460149
          Length = 837

 Score =  837 bits (433), Expect = 0.0
 Identities = 436/437 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcacaagggcatacctaaggacattgcaaggtagccctttgctggtaagcagccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcacaagggcatacctaaggacattgcaaggtagccctttgctggtaagcagccagc 260

                                                                       
Query: 61  tgttcctccacccactcctttctccgaggcatctgcatctgttagttaagaacatgttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tgttcctccacccactcctttctccgaggcatctgcatctgttagttgagaacatgttct 320

                                                                       
Query: 121 ccattggctctgggcaggggctctcactgtggcctgagtgctttcaaggcctggggtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccattggctctgggcaggggctctcactgtggcctgagtgctttcaaggcctggggtctt 380

                                                                       
Query: 181 ataaactcacatacttgcctccttcctgctctgttcagggttccttggcacattgggcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaactcacatacttgcctccttcctgctctgttcagggttccttggcacattgggcac 440

                                                                       
Query: 241 agggggaaaaaaaaggaagaagaaaaagaaagaaaagaagtactaattttctgaatagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggggaaaaaaaaggaagaagaaaaagaaagaaaagaagtactaattttctgaatagga 500

                                                                       
Query: 301 aaagtgcggttttccagattacaaacctgagctgagcttgaagtgagtgaaggtgcagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagtgcggttttccagattacaaacctgagctgagcttgaagtgagtgaaggtgcagaa 560

                                                                       
Query: 361 gaatgtgttcacggacagtgtcctgggcagagccgggggcatgctgcagaagtgagggcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaatgtgttcacggacagtgtcctgggcagagccgggggcatgctgcagaagtgagggcg 620

                            
Query: 421 ggggctgcagccatctc 437
           |||||||||||||||||
Sbjct: 621 ggggctgcagccatctc 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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