BAC Information

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BAC

Clone NameMSMg01-362N08
Chromosome1 (Build37)
Map Location 53,352,359 - 53,352,772
singlet/doubletsinglet
Overlap genePms1, LOC671024
Upstream geneLOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik
Downstream geneOrmdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2, 4930511H11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362N08.T7 (MSMg01no362_n08.b1)MSMg01-362N08.TJ (MSMg01no362_n08.g1)
ACCAG471425AG471426
length793854
length of high quality
(start - end)
416 (43 - 458)206 (76 - 281)
definitionCHROMAT_FILE: MSMg01no362_n08.b1 PHD_FILE: MSMg01no362_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:20 2005CHROMAT_FILE: MSMg01no362_n08.g1 PHD_FILE: MSMg01no362_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCACCATATACATGGCACCTGCTCCTTCCTGAGTTTCTTAGAGCATTC
TTCCTAATACCACTTCTGGTCAGCCCCTTAGTATTTCTCCTCTGAACGAC
TCCAATAACTACCAAATTGATATATGGATTTAAATATTTGTAAGTTGTTT
CTATAATTAAAGTATCTTTGCTATCCTACTTTAAATTTTTAAGATTTTTC
AACTGCTAAGTATGTTAAGTCCAAATTCCCTACTACCCTATCTCTCTAAT
TTCATCCCATTTTCCAAATGTACACACAGTACTAATCTGGTCACACTACA
ATGTGGCTCTCTTTACCTAGATGTGGTAGGATTTCCTGGGCCACATGACA
TTTTTCTGGGATGTCTTGTGTCAGTTCCCAAAACTTTTTCCATATTCCAA
TCTCCCAAGAGATTAGGCATCTCTTCGTTTTTTTAATTCTTACCCCAAAT
CGTCATTTTATTTATCCTGCCCCTTCTTCTTTTGTCCATATTGCTTTTTT
TTACTGTGAATGTATTATCGCAATCTAATTCTTTCATCGCCGTTTTATTC
TTTTTGTTTTGACCTCATACTTCTTCCTCCTGAATATCTCTTACTTTTTC
TGTATTACTTCTCTTCCCTTTTTTCTCGTTTTTAACTTTATTTTTATCTT
TTTACCAATTCTCCCCTCATCTTCTATTATTCCCCTCTTCTTTTTTTCTC
TTTCTTTTTTCTATTTGCTATTTTATTTTCTTTCTTCCCTACA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTAAGGAATACCGAAAGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGCT
CAAAAACTCAGGTGACAGCAGATGTTGGCGAGGATGTGGAGAAAGGGGAA
CACTCCTCCATTGTTGGTGGCATTGCAAGCTTGTACAACCTCTCTGGAAA
TCAGTCTGGCAGTTCCTCAGATTATTCGGATTATTATTACCGGAAGATCT
ATCCCTACCTTTTCCCGGCCTATATTCATAAGACGCCCCCGCCTGGTCAT
ATTTACTCTTGTTGCATTCCTGTATACAGCACCCCTTATTTACCATCATC
CTCCATTTCGGATACTAACCTACATCCCCTCCCTCCTCTAGCGATTGGTT
CACCCCATTTTGCCCCCCATCTCTCATCCCTCCCCATCTTTTTTTCCTCC
CCTTTCCCCAATTATCTGCCCCCTTCCCGCTCTTTTCTTATCGTTCCACC
CTCCCCCCTTTGTTCATTTTCTTTATTCTTCACCTCCCGCCTTCCTATTC
CCGTTTCTTTGCCCTTTTTACCCCCCTTATTCTCCCTTCCTTCATTTTTA
CACTTCCTTCTTCTTCCTCCTACCTCCCCCTTACCCTTATCTGCCCTCTT
CCTCACCCTTCCCCTCTTTCCACATTCCACTCTTTCTCTTTTTTTTATTT
CCCCCTGCCGCCTCTCCTCTCTTTATTTTTTTTTCTCTTTTTCCCCCTTT
TTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_n08.b1 MSMg01no362_n08.b1 CHROMAT_FILE:
MSMg01no362_n08.b1 PHD_FILE: MSMg01no362_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:20 2005
         (416 letters)



>mm_chr1_53352155_53352972
          Length = 818

 Score =  789 bits (408), Expect = 0.0
 Identities = 412/414 (99%), Gaps = 2/414 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccaccatatacatggcacctgctccttcctgagtttcttagagcattcttccta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccaccatatacatggcacctgctccttcctgagtttcttagagcattcttccta 264

                                                                       
Query: 65  ataccacttctggtcagccccttagtatttctcctctgaacgactccaataactaccaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataccacttctggtcagccccttagtatttctcctctgaacgactccaataactaccaaa 324

                                                                       
Query: 125 ttgatatatggatttaaatatttgtaagttgtttctataattaaagtatctttgctatcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgatatatggatttaaatatttgtaagttgtttctataattaaagtatctttgctatcc 384

                                                                       
Query: 185 tactttaaatttttaagatttttcaactgctaagtatgttaagtccaaattccctactac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tactttaaatttttaagatttttcaactgctaagtatgttaagtccaaattccctactac 444

                                                                       
Query: 245 cctatctctctaatttcatcccattttccaaatgtacacacagtactaatctggtcacac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctatctctctaatttcatcccattttccaaatgtacacacagtactaatctggtcacac 504

                                                                       
Query: 305 tacaatgtggctctctttacctagatgtggtaggatttcctgggccacatgacatttttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacaatgtggctctctttacctagatgtggtaggatttcctgggccacatgacatttttc 564

                                                                 
Query: 365 tgggatgtcttgtgtcagttcccaaaact--ttttccatattccaatctcccaa 416
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 565 tgggatgtcttgtgtcagttcccaaaactctttttccatattccaatctcccaa 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 818
Length adjustment: 9
Effective length of query: 407
Effective length of database: 809
Effective search space:   329263
Effective search space used:   329263
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)