BAC Information

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BAC

Clone NameMSMg01-363A06
Chromosome1 (Build37)
Map Location 173,883,789 - 174,100,496
singlet/doubletdoublet
Overlap geneVangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a
Upstream geneFcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6
Downstream genePea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363A06.T7 (MSMg01no363_a06.b1)MSMg01-363A06.TJ (MSMg01no363_a06.g1)
ACCAG471561AG471562
length836773
length of high quality
(start - end)		162 (41 - 202)502 (78 - 579)
definitionCHROMAT_FILE: MSMg01no363_a06.b1 PHD_FILE: MSMg01no363_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:35 2005CHROMAT_FILE: MSMg01no363_a06.g1 PHD_FILE: MSMg01no363_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,883,789 - 173,883,947)(174,099,995 - 174,100,496)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACATCTGCCTCCCCCTGAATCCTCCAGGAATGAGAGGGAAAAGCAGAAAA
AGTAAGAGAAGTTTGTGGGCCAGCTAGCCTGATGAATGAAACAGCTTGCA
AGACCCTATCTAGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGNNNNNNNNNNNNTNNTNNNTTTTTTTTTTTGTTTTGTNTTTTTTCTT
TTTTTTGTTTTTGTCTTTTTTTTATTTGTGTTTATTGTGTGTGTGTTTTT
AGTTTTCCCATTAGTTTTTTTCTTTTTTCCTCTTTCTCTGTGGNGCGTGC
TCCTCTTTCTTTCCTCTCCGTTCCTTTCNCCCTTTATTTTCCTCTCTTTT
TTTGTTTTTTCTCTTCTTTTTTCTTTCTTTTCCTTCTGCCTCCTTTTTCC
TTCTTCTCTCCCTTCCTTCTTTTTTCTTCTTTCTTTTCTCCACTTTTTTT
TCTCTTTTTTTCTCTTCTCCTTTACATTTTGTATATGTATCATCCCCGCG
TTTTTTTCCGTGGTCCTCTTCGCTCCCCTTTTTATTTTCTTCTTCCACTT
TCTTTTTTTTCTTTTTTTTCCTCCTCCATTTTTTTTTCTTGTTCTTTTTT
TATATTTTTTCCTCCTTCTTTTCTATTCCCTTATCCTTGCTGTTTCTTTC
TTTTTTTCTTTTCTTGTCCATCTCCCTTTCTTTTCCTATTTATCATCCCC
TTACCTCCTTATCCCTCTTCTTCCACGCTTCTTATATGTGTTCACTTTAT
TATGTCTCTTTATGTTCCTTTTTATTACTTATTATT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTAGGAGGGAATTAGACCTA
ATAAGCCTAGTCCTGGCTCCAGAGAGCCATAGGCCCTGGGAGAAACCTAC
TATTGTTGTTTCACTGAAAAGTAACATGTCAAACTGTTTTCTAAATATCT
ATCTTTATATTCACAGATATGTGTTCCATTCTATTTCAGTGAGCAATGGT
TAACAGACTTATAATTGGTCAAGGCACCAAGAATAAATGACTATCCAGTG
CTTAATCATAAATAGATCATTTATATAAACTCCCTACCAAGGTTCAGAGA
GTATGACAACAGAGCTGAAGAATGAGGAGGACTGTTGTCGACCACTGCAC
TCATGAACTCACAGCAGCTGTGGTGACACAAGGTCAAGCCAGTCAGGATT
CCAGTACAAGTGGGGGAGTGCTTATGAGGCCCTATACTCAACAACTGTTA
GCAGATGATGGCTGCTGGGGAAAGGGAGTCCCCGTTCTTCAGGGGTACGG
CAACTCCTAGACTGTCCCCGCTCCTGTGGATGGTCCCACACGCATGTGAC
TGCTAGAAGCACAAACTAAATCTAGCGGATTACTTAAAAAAAAAAAAAGA
CTATATTGAAACTTGGAGGAAGAACTGTAAATAGGGTCCATAGGAAATGG
CGTAAATTCGGTGGGGAATATATATCAAGAAAAATTTTTTTCGTGGCCCT
TCACTTTCATTAAGCAATACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_a06.b1 MSMg01no363_a06.b1 CHROMAT_FILE:
MSMg01no363_a06.b1 PHD_FILE: MSMg01no363_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:35 2005
         (162 letters)



>mm_chr1_173883586_173884147
          Length = 562

 Score =  300 bits (155), Expect = 3e-86
 Identities = 158/159 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacatctgcctccccctgaatcctccaggaatgagagggaaaagcagaaaaagt 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacatctgccaccccctgaatcctccaggaatgagagggaaaagcagaaaaagt 263

                                                                       
Query: 64  aagagaagtttgtgggccagctagcctgatgaatgaaacagcttgcaagaccctatctag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagagaagtttgtgggccagctagcctgatgaatgaaacagcttgcaagaccctatctag 323

                                                  
Query: 124 attgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 162
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no363_a06.g1 MSMg01no363_a06.g1 CHROMAT_FILE:
MSMg01no363_a06.g1 PHD_FILE: MSMg01no363_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:36 2005
         (502 letters)



>mm_chr1_174099844_174100745
          Length = 902

 Score =  971 bits (502), Expect = 0.0
 Identities = 502/502 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctaggagggaattagacctaataagcctagtcctggctccagagagccataggccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttcctaggagggaattagacctaataagcctagtcctggctccagagagccataggccct 594

                                                                       
Query: 61  gggagaaacctactattgttgtttcactgaaaagtaacatgtcaaactgttttctaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gggagaaacctactattgttgtttcactgaaaagtaacatgtcaaactgttttctaaata 534

                                                                       
Query: 121 tctatctttatattcacagatatgtgttccattctatttcagtgagcaatggttaacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tctatctttatattcacagatatgtgttccattctatttcagtgagcaatggttaacaga 474

                                                                       
Query: 181 cttataattggtcaaggcaccaagaataaatgactatccagtgcttaatcataaatagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cttataattggtcaaggcaccaagaataaatgactatccagtgcttaatcataaatagat 414

                                                                       
Query: 241 catttatataaactccctaccaaggttcagagagtatgacaacagagctgaagaatgagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 catttatataaactccctaccaaggttcagagagtatgacaacagagctgaagaatgagg 354

                                                                       
Query: 301 aggactgttgtcgaccactgcactcatgaactcacagcagctgtggtgacacaaggtcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aggactgttgtcgaccactgcactcatgaactcacagcagctgtggtgacacaaggtcaa 294

                                                                       
Query: 361 gccagtcaggattccagtacaagtgggggagtgcttatgaggccctatactcaacaactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gccagtcaggattccagtacaagtgggggagtgcttatgaggccctatactcaacaactg 234

                                                                       
Query: 421 ttagcagatgatggctgctggggaaagggagtccccgttcttcaggggtacggcaactcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ttagcagatgatggctgctggggaaagggagtccccgttcttcaggggtacggcaactcc 174

                                 
Query: 481 tagactgtccccgctcctgtgg 502
           ||||||||||||||||||||||
Sbjct: 173 tagactgtccccgctcctgtgg 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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