BAC Information

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BAC

Clone NameMSMg01-363B07
Chromosome1 (Build37)
Map Location 71,726,658 - 71,912,283
singlet/doubletdoublet
Overlap geneGabarapl2-ps1_652.1, LOC383528, LOC675667
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814
Downstream geneEG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363B07.T7 (MSMg01no363_b07.b1)MSMg01-363B07.TJ (MSMg01no363_b07.g1)
ACCAG471608AG471609
length763764
length of high quality
(start - end)		521 (41 - 561)471 (82 - 552)
definitionCHROMAT_FILE: MSMg01no363_b07.b1 PHD_FILE: MSMg01no363_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:41 2005CHROMAT_FILE: MSMg01no363_b07.g1 PHD_FILE: MSMg01no363_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,911,835 - 71,912,283)(71,726,658 - 71,727,128)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCAGGAATCTCGGTTCTCAGATGTGTGGATGCTGCAATGAGCAAAACAG
ACAAGGTTCCTAACCTGACAACGTTTATATTTTGATGAGAAGGGAGGAGA
ACAAAATCTCTGTTCCTTCAGGTGAAAGGCATCACAAAGAACGACATGTA
TCCACCTGGATACAGGTGAGAATGGGATGAGCCAGGTTGCTTGTGGGTTA
ATGGGGCTTTAGCCAATGAAATGGGAGCGGATAGTGATCTGTGGCCTCTG
GAGAGAAACATTGTTTCCTGACTTAACTTTTCTTTCCAGTGGCAATTGTT
TTGAAAAGGGCAGAAGAAAGAAGTCTGTCTGGAAGACTCTCTCGGTAGAA
TTTTCATAGTGCTAATTATTTGAAGCTAGGGAGATTTGGAGATCTGTTCT
TAGGGCATTGTAACACTGGTCTGAATGGAAGCAGAGTGGGGACCAGGAGT
GATAGGAACAGGGGCTGAGCTCACAGAGAAGATGGGCTGGGGATTCCTCT
CTGTATAGATGCTTGACAAATGAATTGACTGGAGAGAATAAAGAGCTGAT
GAAAGAAGAGCAAGACCACTCTTGGAACTTCCCTCCAGGAAGAGATGTAA
CACCAGCCTTGTAAACTCCTTTGAACTTCAGATTTCATTTCTTCCCCCCG
ATTTTATATAATGGAACCCTTTTTGTTATAATGGNTTTGACTTTTGCCCC
TCCTTTTTCTTTG

NCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGTTTCCAAAAGATTT
CTTTGTCTTTTAACTAGCTTTAGCTAACATTTAATAATGGAAATCCAGGC
AACAAAAATATTTACTGCAAGTCATTTGAAACAACAGAGGATAGTGTCTG
GGTGGTAGAGAGAGCCAAAGGCCGTTAGTCATTCATCTTCTCAGGCTTCA
TAGACTCACAACTCTTCAGCCAAACTCCTACAAGCAGTCACTAATCTGTT
CTCAGTCTCTAACCCTCCCCAAGGTGCATTCTTCCGGGGAAATGTTGCTA
CGTGGACCGCACAGATTATTTAGATTAGCTTTCACTTGACATGACAAGTT
TCCAAGAAGCCATGCAGAGTGAAATATAAAAAGGGCGGGCGGGACCGAAT
TTTAGCAAAACCCCACAAACAATTCAGTATTGCAGGCACACATCAGTCTT
TGCTCAGACTGTAGTTGAGCTCTGTGACTCACAGACTTCATTGGCAAGAA
GATCTTTGTCTTTAGAAATAAGCGGTCAAATTGGCCTCAGTAATTATAGG
TTGGCAGGACTCTGGGAACTGATTCAATGCCAAGCCATTATTGTACCCAA
AATTAAACTCCTAACTGGGAAAAGGCCCCCACGTAAAGTCCCCAAAGTGT
AGCGTTTCATTATTTATCCCATCTCGGGAAAATAAATTTGTAACTTGCAA
CCTTGGTTTTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_b07.b1 MSMg01no363_b07.b1 CHROMAT_FILE:
MSMg01no363_b07.b1 PHD_FILE: MSMg01no363_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:41 2005
         (521 letters)



>mm_chr1_71911363_71912283
          Length = 921

 Score =  822 bits (425), Expect = 0.0
 Identities = 443/449 (98%)
 Strand = Plus / Minus

                                                                       
Query: 73  acctgacaacgtttatattttgatgagaagggaggagaacaaaatctctgttccttcagg 132
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 921 acctgacaacgtttatattttgatgagaagggaggagaacaaaacctctgttccttcagg 862

                                                                       
Query: 133 tgaaaggcatcacaaagaacgacatgtatccacctggatacaggtgagaatgggatgagc 192
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 861 tgaaaggcatcacaaagaacgacatgtatccacctggatacagatgagaatgggatgagc 802

                                                                       
Query: 193 caggttgcttgtgggttaatggggctttagccaatgaaatgggagcggatagtgatctgt 252
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 801 caggttgcttgtgggttaatggggctttagccaatgaaatgggagcgaatagtgatctgt 742

                                                                       
Query: 253 ggcctctggagagaaacattgtttcctgacttaacttttctttccagtggcaattgtttt 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcctctggagagaaacattgtttcctgacttaacttttctttccagtggcaattgtttt 682

                                                                       
Query: 313 gaaaagggcagaagaaagaagtctgtctggaagactctctcggtagaattttcatagtgc 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaaagggcagaagaaagaagtctgtctggaagactctctcggtagaattttcatagtgc 622

                                                                       
Query: 373 taattatttgaagctagggagatttggagatctgttcttagggcattgtaacactggtct 432
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 taattatttgaagctagggagatttggagatctattcttagggcattgtaacactggtct 562

                                                                       
Query: 433 gaatggaagcagagtggggaccaggagtgataggaacaggggctgagctcacagagaaga 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 561 gaatggaagcagagtggggaccaggagtgataggaacaggggctgagctcacagagaagg 502

                                        
Query: 493 tgggctggggattcctctctgtatagatg 521
           ||||||||||||||||||||| |||||||
Sbjct: 501 tgggctggggattcctctctgcatagatg 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no363_b07.g1 MSMg01no363_b07.g1 CHROMAT_FILE:
MSMg01no363_b07.g1 PHD_FILE: MSMg01no363_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:41 2005
         (471 letters)



>mm_chr1_71726458_71727328
          Length = 871

 Score =  911 bits (471), Expect = 0.0
 Identities = 471/471 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggtttccaaaagatttctttgtcttttaactagctttagctaacatttaataatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggtttccaaaagatttctttgtcttttaactagctttagctaacatttaataatgga 260

                                                                       
Query: 61  aatccaggcaacaaaaatatttactgcaagtcatttgaaacaacagaggatagtgtctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatccaggcaacaaaaatatttactgcaagtcatttgaaacaacagaggatagtgtctgg 320

                                                                       
Query: 121 gtggtagagagagccaaaggccgttagtcattcatcttctcaggcttcatagactcacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggtagagagagccaaaggccgttagtcattcatcttctcaggcttcatagactcacaa 380

                                                                       
Query: 181 ctcttcagccaaactcctacaagcagtcactaatctgttctcagtctctaaccctcccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcttcagccaaactcctacaagcagtcactaatctgttctcagtctctaaccctcccca 440

                                                                       
Query: 241 aggtgcattcttccggggaaatgttgctacgtggaccgcacagattatttagattagctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtgcattcttccggggaaatgttgctacgtggaccgcacagattatttagattagctt 500

                                                                       
Query: 301 tcacttgacatgacaagtttccaagaagccatgcagagtgaaatataaaaagggcgggcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcacttgacatgacaagtttccaagaagccatgcagagtgaaatataaaaagggcgggcg 560

                                                                       
Query: 361 ggaccgaattttagcaaaaccccacaaacaattcagtattgcaggcacacatcagtcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaccgaattttagcaaaaccccacaaacaattcagtattgcaggcacacatcagtcttt 620

                                                              
Query: 421 gctcagactgtagttgagctctgtgactcacagacttcattggcaagaaga 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctcagactgtagttgagctctgtgactcacagacttcattggcaagaaga 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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