BAC Information

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BAC

Clone NameMSMg01-363L22
Chromosome1 (Build37)
Map Location 173,510,165 - 173,510,523
singlet/doubletsinglet
Overlap geneCd244
Upstream geneLOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna
Downstream geneLy9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363L22.T7 (MSMg01no363_l22.b1)MSMg01-363L22.TJ (MSMg01no363_l22.g1)
ACCAG472108AG472109
length776773
length of high quality
(start - end)
368 (36 - 403)319 (79 - 397)
definitionCHROMAT_FILE: MSMg01no363_l22.b1 PHD_FILE: MSMg01no363_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:33 2005CHROMAT_FILE: MSMg01no363_l22.g1 PHD_FILE: MSMg01no363_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAACC
CCCTTACCTCCAGGGTTTCCTTAACAGTTCAATGGCTCCATCTGAGAAAG
TCTTCCTTCTCTAGACCTGAGATACATGCTCATCATGGCAGCAACCAACC
ATCCCGTATAAGATGCTCTAAAGGAGGAAGCTCACCCTCACCCAGCACCC
AGATCAAGAGTTCCTCCTCAGACATATTCAGACTATTCTCTCAGGAGCCC
AACTCGGTCCACTGCTAAAGCCAGCGGACAGGCAGATGTTAGTCACTCTT
AGGAGGGATTTCTTTGTGATACAATTTGCTGACAAGCTGAGGGTTTGACA
GTTCCTGAACGTGGTTCTTAAAGAGGGGAGGGGAGGAGAGGGGAGGGAAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNN
NNNNGNNNNNGNNNNNNNNNGNNTNNGNGGGGGGGGNNGGGGNGNGGGGG
GGGGGGNNGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGNGG
NGGGGGGGGGGGGGTGGGGTTGGNGG
TTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTGAAAAGAAAAGGAAAAAA
AGCACTCAAGGATGGGTCCAGAAATCATTGTCTTAAGGTCAATATAGAGA
TTGTAAGTGCAAGGCACAGGTTCTAGTTCAACACATCAGAAACACTGATG
GCAGCTAGGTGATGGTGCACACCTTTAGTCCCAGCACTTGGATGGCAGAG
GCAGGCTCATCTTAGAGTTCAAGGCCAACCTGAACTACAGAATGAGTTCC
AGAACAACCAAAGCTACACATAAAAAACCTGTCTCAAAAACTAAAAAGAA
AGAAGGGAGGGAGGGAGGGAAGAAAGGAGGGAGAGTGGGAAGAAAGANTT
ANTAAATTATAGAAGGAAGGAAAGAGAAAAATGAAAGGGAGAAAAAAATA
TTTAGAAAGAAAGAAAATAATAGAAAAGAAAAGGATAGATAGATAGAATG
ATTGAAAGAAAGAAAGAAAGATAGAATGGAAAATAGATTGATTTATTGAT
TGTATTGATGTTGGAATGTGATTATACTATGANTTATGGNTGAATAAANA
TTTTATTAATTTTGAGTGAGTTTTTTTTTAATTTTTGAGAAAGGATTTTT
TGTATCTAAATATGTTATTTTGTTTTGATGTTTTTTTATGATTTATATTT
TTTTAAAAAAGTGTTTTTTTTTGAAGTAAATTTTGTATGAATATTGTGGG
TAAATATTTTTGGATTTTAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_l22.b1 MSMg01no363_l22.b1 CHROMAT_FILE:
MSMg01no363_l22.b1 PHD_FILE: MSMg01no363_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:33 2005
         (368 letters)



>mm_chr1_173509967_173510735
          Length = 769

 Score =  507 bits (262), Expect = e-148
 Identities = 335/362 (92%), Gaps = 7/362 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaccc---ccttacctccagggtttccttaacagttcaatggctccatctgag 61
           ||||||||||||    |||   |||||||||||||||||||||||||||||||||||| |
Sbjct: 557 gaattcaaacccaaaactt---tccagggtttccttaacagttcaatggctccatctggg 501

                                                                       
Query: 62  aaagtcttccttctctagacctgagatacatgctcatcatggcagcaaccaaccatcccg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaagtcttccttctctagacctgagatacatgctcatcatggcagcaaccaaccatcccg 441

                                                                       
Query: 122 tataagatgctctaaaggaggaagctcaccctcacccagcacccagatcaagagttcctc 181
           | ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 440 tgtaagatgctctaaaggaggaagctcactctcacccagcacccagatcaacagttcctc 381

                                                                       
Query: 182 ctcagacatattcagactattctctcaggagcccaactcggtccactgctaaagccagcg 241
           || |||  ||||||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct: 380 cttagatgtattcagactattttctcaggagcccaacgcgatccactgctaaagccagcg 321

                                                                       
Query: 242 gacaggcagatgttagtcactcttaggagggatttctttgtgatacaa-tttgctgacaa 300
           |||||||||||||| ||||||||||||||||||||||||||||||| | |||||| ||||
Sbjct: 320 gacaggcagatgttggtcactcttaggagggatttctttgtgatacgactttgctaacaa 261

                                                                       
Query: 301 gctgagggtttgacagttcctgaacgtggttcttaaagaggggaggggaggagaggggag 360
           |||||| ||||||| |||||||||| |||| |||||||||| ||||||||| ||||||||
Sbjct: 260 gctgagagtttgactgttcctgaacttggtccttaaagaggtgaggggaggggaggggag 201

             
Query: 361 gg 362
           ||
Sbjct: 200 gg 199


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 769
Length adjustment: 9
Effective length of query: 359
Effective length of database: 760
Effective search space:   272840
Effective search space used:   272840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)