BAC Information

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BAC

Clone NameMSMg01-363P17
Chromosome1 (Build37)
Map Location 166,253,834 - 166,254,217
singlet/doubletsinglet
Overlap geneNme7
Upstream geneScyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1
Downstream geneAtp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363P17.T7 (MSMg01no363_p17.b1)MSMg01-363P17.TJ (MSMg01no363_p17.g1)
ACCAG472288AG472289
length969790
length of high quality
(start - end)
---366 (82 - 447)
definitionCHROMAT_FILE: MSMg01no363_p17.b1 PHD_FILE: MSMg01no363_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:53 2005CHROMAT_FILE: MSMg01no363_p17.g1 PHD_FILE: MSMg01no363_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTTCTTCTTCCCCTTCTCTCTATCCCGCGCCCAGTACATATCCTTGC
AGTCAAAGCCTCGTTACCACCTGCATTGCCCTATATGACCTAATCCCCAT
CTTATCCTCTCACTACAAGAGAACAGACCACCGATGTCTCGCCACGGCAC
TAGACTACGAGTCGTATAACGATGTTTCTCTCCCTGAAGAAGCGCACGAG
ATGCGCGACTANGACCTGGCTCAGATTCTCGGTATTGCAAACACTGAGTA
TGCGTATACCGCCGCTTACCGTTAGCTATCACAGCCATTCACCATCACTT
AGTTATACTCACACAGCGAGCCATCGACGAGAATTCACCCATTCACGCTA
TGTGACTATAACATTCTATCCCTTAGTATAACCCGCCACCTTTGATCATT
GCTGCATCTGTCGTGCTTTAACTCCCCAACCATTCTTGTCCCCTTCTACA
CCTTGGCCTCATTTACACACAACTATCATATTTATCCATTATCACTGATG
CGGCTACGATTCATGTCCCTTATCTTATGCTATCACATACGGCCCTAGTA
TTGTGTCAACCCNACCTGTTTCTTGTCGACGCACTATATAGTATACCCCA
GGTGGCCCCCAATAGTGCTCTGATAATGTTTAATAATACCTTCGCCCATT
TATATCCATTTGCACTTATCCTATTATTCTTCTCCCACCACCCATGTATT
GAATAATGCCACTGCAATCGTACCTAGCGATTCTGTATGACGAAATGGAT
TGAATATATTACACCCCTTCCCACTCGACCTTCCACTCTCTGATTCACGC
TTCACACATTATCAGCACCGCCGCATGTTCTCTCTACTATCTCCATGCCC
AATCGTTTATTGCCGCGTGTGGTTTCACCTTTGTATATATTTTCGCTCGC
GACGCTCCCACATTATTTTAGTGTTAACTGCTTTCAGCATGAACACACCG
CCGCCTCTTATCACTGGCC
NNTTTTCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGCCAGTAAATGCTTCA
AGATGAAATAAAGACATTTCCAAACATCCACTGTAGTTTTGAACTCACAT
TGCTACACCTTGCTACTTACTGTTTGTATTAAATTTCTCTTTCTCCCCCC
CCCCCGTCTCTTTTTCTCCTCTCTCTGTCTCTGTCTCTCTGTCTCTCTCT
CTCTGGTATGCTTTTCTATCCCATGAACTGAGTTTCACTTACTGGCTTCA
TAGAATTTGGTATCAAACTTATGCAGTGATGAATTTTGTAAAGACTTTTT
AAATTAAAAACTATGTCCTTTAACTATATTCATCCCCCCCTTTGCCTTCT
CACTCTTTCTGTTTCCAAATAGTTCCCTTTCTACCTTGATGGAGAGAGAG
AGGTAGTTAGAGCTAATTTAATTTTTTTTAATCCTTATCCCTTCTTTTAT
TCATCATTCTTTCTCTCATTCCTCTATCTTTATTTTTCCTTACCTTTTAT
TTTTCCAATTTTTTCTCCCACTTCTCTATTCCTCAATTTTATTTTATTCC
CCCCCTATATATAATATTCTTTTTTCTTTTCTCTTTTCCCTTTCCCCTCC
TCCTTTTTTTTCTTACCATTCTTTCCCACTTTACCCATTTCCTCTTTTTC
TCATCTACTTTGTCTCTTCTTTTTTCTACTCTTTCTTACCACTCTCCACA
CTCCCTTTCTTTAACCCCCCACCTTATTCTTTTATCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_p17.g1 MSMg01no363_p17.g1 CHROMAT_FILE:
MSMg01no363_p17.g1 PHD_FILE: MSMg01no363_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:54 2005
         (366 letters)



>mm_chr1_166253652_166254417
          Length = 766

 Score =  601 bits (311), Expect = e-176
 Identities = 360/385 (93%), Gaps = 20/385 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgccagtaaatgcttcaagatgaaataaagacatttccaaacatccactgtagttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tgtgccagtaaatgcttcaagatgaaataaagacatttccaaacatccactgtagttttg 242

                                                                       
Query: 61  aactcacattgctacaccttgctacttactgtttgtattaaatttctctttct------- 113
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||       
Sbjct: 243 aactcacattgctacaccttgctacttattgtttgtattaaatttctctttctctctctg 302

                                                                       
Query: 114 cc-cccccccccgtctcttt---ttctc---ctctctctgtctctgt----ctctctgtc 162
           || |||||||||||||||||   |||||   |||||||| ||||| |    |||||| ||
Sbjct: 303 cctcccccccccgtctctttttcttctctctctctctctctctctctccccctctctctc 362

                                                                       
Query: 163 tctctctctctggtatgcttttctatcccatgaactgagtttcacttactggcttcatag 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tctctctctctggtatgcttttctatcccatgaactgagtttcacttactggcttcatag 422

                                                                       
Query: 223 aatttggtatcaaacttatgc-agtgatgaattttgtaaagactttttaaattaaaaact 281
           |||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||
Sbjct: 423 aatttggtatcaaactta-gccagtgatgaatttcgtaaagactttttaaattaaaaact 481

                                                                       
Query: 282 atgtcctttaactatattcatccccccctttgccttctcactctttctgtttccaaatag 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 atgtcctttaactatattcatccccccctttgccttctcactctttctgtttccaaatag 541

                                    
Query: 342 ttccctttctaccttgatggagaga 366
           |||||||||||||||||||||||||
Sbjct: 542 ttccctttctaccttgatggagaga 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)