BAC Information

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BAC

Clone NameMSMg01-364C14
Chromosome1 (Build37)
Map Location 57,209,874 - 57,399,493
singlet/doubletdoublet
Overlap geneLOC383509
Upstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869
Downstream gene1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364C14.T7 (MSMg01no364_c14.b1)MSMg01-364C14.TJ (MSMg01no364_c14.g1)
ACCAG472425AG472426
length803836
length of high quality
(start - end)		428 (48 - 475)121 (72 - 192)
definitionCHROMAT_FILE: MSMg01no364_c14.b1 PHD_FILE: MSMg01no364_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:09 2005CHROMAT_FILE: MSMg01no364_c14.g1 PHD_FILE: MSMg01no364_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,209,874 - 57,210,299)(57,399,373 - 57,399,493)
sequence
NNTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCG
GAATTCTTACCTGGTATCTCAGCTCCACCTCTTAAAGGCATCTACTAGGA
TATGGGGTCAGACAGAAGCTAGTCATTCTTCTAAACCTAGCTTCAATAGG
TCAAGATTTGGTAGATTTGTTAGGATTTGGTAGAACTATTCTAATTTGAT
AGAACCAGGCTGGCTCAACTCTATCCTCCTGTGTTAAAGAAGGTGCTAAG
AGGAATGGCTCTCACACTGTATAGAAAGGGTATGTTTTGTGCAGCAGGAG
GTCCTGGTGTACCTTGAAGCATGGGAACCCTATTAGGAAACTGGTGGAAG
AGGCTGCATGCAGAGGCTGGAGGAAGGAAGAGACCCATTTGAGAAACACA
AGATGAGGCTAGCCCATCTGCAAGGATAGGTAAGTAGGCTGGGGCTTGGA
GCTTTTAAGACAAGGTGTCATGTAGCCCAGGCTGGCCTTTCATGTAATGA
AGATGACCTTGAACTCTGATCCTCCTCCTCCTCCTCTTCCTCCTCCTCTG
GCCCCTCCTCCCTCTCTCTGTATCTCTGTTTCTAGTTCCTGTCCCCTGCC
CCGGTCCCTGGTTCTGTGTTATTTCNCTCTCATTCTTTTTCTTTTTTCTC
TCTGTTGTGATGTTGTGATATTTTTATACTTCCTTCTCTACTTTATTTTT
CCTTTTTTTTTAGTTCTTCTTTTCGCCTTCCTTTTCTATACTTATGTCTT
TTCACTTTTTGTATCTTCTTTTTCTTATCCTTTATCCTTTTTTTCTCTTT
TTG

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAATTGCTTGTAAGAGGCCCTAGTAACT
GAAGGGATGCATTCAAATAATGAGAGGAAGGAGCGACTTCCCTACCCAAC
CCCATATGTTCTCATTCAGGGAACAGCTTCAGACTGATTTAGGAACATTT
CCAGAAGCTTTCAAAGAATCTCTGCGGAAGAGGGGAATTCCCTATTCCTT
GCAGCTGAAACACTTGGNGNNAATTCTCCCGGCGGGGGGAGGGTTTCCCC
CTTTTCCTTTTTAAAAGCCCAAAATAAAATATTTTTCCCCCAACGCCCCC
CTTGGGGGGGGAACTCTTGTTTTTTTCAACAACGGCTGCCNNNCCCNNNN
CNACNGGNGGGGGGGGTGTTGGTGGTNGGGNGGGTCGTGTTGTACCTGTA
TCATGCTGTGGTCGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNN
NTGTTTCCTAGGCCTGGGTTGTCCAATGCTTTCTTTCTTACTCCTTTTGT
AACATATCTTTCTCCACTGTCTCCACACTTACTCTTTTTCGGTTTCTATA
TTATTTTCTATCCTTGTTTTATCTTCCTTTTTTTCCAACCCTCTTCTTTC
CTCTCTTTTTTGCTCTGTTCTTCTGATGTCCTCGATGATGTTGCATCGCT
CTTTAATATCTGTCATTCTTATAATCTTTTAATATTGATCACCTAATATT
TTTCCTCTACAGATTCCTCCTACCTTATCTATATTTTTCCTTCTATACAT
TCCGTTACCTCCTATTCTCTCTTCTTGTTACTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_c14.b1 MSMg01no364_c14.b1 CHROMAT_FILE:
MSMg01no364_c14.b1 PHD_FILE: MSMg01no364_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:09 2005
         (428 letters)



>mm_chr1_57209672_57210499
          Length = 828

 Score =  777 bits (402), Expect = 0.0
 Identities = 420/426 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcttacctggtatctcagctccacctcttaaaggcatctactaggatatggggtc 62
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcttacctggtagctcagctccacctcttaaaggcatctactaggatatggggtc 262

                                                                       
Query: 63  agacagaagctagtcattcttctaaacctagcttcaataggtcaagatttggtagatttg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agacagaagctagtcattcttctaaacctagcttcaataggtcaagatttggtagatttg 322

                                                                       
Query: 123 ttaggatttggtagaactattctaatttgatagaaccaggctggctcaactctatcctcc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttaggatttggtagaactattctaatttgatagaaccaggctggctcaactctatcctcc 382

                                                                       
Query: 183 tgtgttaaagaaggtgctaagaggaatggctctcacactgtatagaaagggtatgttttg 242
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtgttaaagaaggtgctaagagaaatggctctcacactgtatagaaagggtatgttttg 442

                                                                       
Query: 243 tgcagcaggaggtcctggtgtaccttgaagcatgggaaccctattaggaaactggtggaa 302
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 443 tgcagcaggaggtcctggtgtaccttgaagcatgggaaccctaagaggaaactggtggaa 502

                                                                       
Query: 303 gaggctgcatgcagaggctggaggaaggaagagacccatttgagaaacacaagatgaggc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaggctgcatgcagaggctggaggaaggaagagacccatttgagaaacacaagatgaggc 562

                                                                       
Query: 363 tagcccatctgcaaggataggtaagtaggctggggcttggagcttttaagacaaggtgtc 422
           | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 563 tggcccatctgcaaggataggtaagtaggctgggggttggagcttttaagacaaggtgtc 622

                 
Query: 423 atgtag 428
           ||||||
Sbjct: 623 atgtag 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no364_c14.g1 MSMg01no364_c14.g1 CHROMAT_FILE:
MSMg01no364_c14.g1 PHD_FILE: MSMg01no364_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:10 2005
         (121 letters)



>mm_chr1_57399173_57399693
          Length = 521

 Score =  226 bits (117), Expect = 3e-64
 Identities = 120/121 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaattgcttgtaagaggccctagtaactgaagggatgcattcaaataatgagaggaagg 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaattgcttgtaagaggccccagtaactgaagggatgcattcaaataatgagaggaagg 262

                                                                       
Query: 61  agcgacttccctacccaaccccatatgttctcattcagggaacagcttcagactgattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcgacttccctacccaaccccatatgttctcattcagggaacagcttcagactgattta 202

            
Query: 121 g 121
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 521
Length adjustment: 8
Effective length of query: 113
Effective length of database: 513
Effective search space:    57969
Effective search space used:    57969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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