Query= MSMg01no364_e11.b1 MSMg01no364_e11.b1 CHROMAT_FILE:
MSMg01no364_e11.b1 PHD_FILE: MSMg01no364_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:20 2005
(275 letters)
>mm_chr1_163493161_163493835
Length = 675
Score = 427 bits (221), Expect = e-124
Identities = 248/271 (91%), Gaps = 22/271 (8%)
Strand = Plus / Plus
Query: 5 gaattcaaagaaagtacagatgggctgtgggacctgctggtttgcaaagggaagagctga 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaagaaagtagagatgggctgtgggacctgctggtttgcaaagggaagagctga 264
Query: 65 ggctggcagaggaaaggagagtcagagtaaccctgccttgctgattgaattgcatgctat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggctggcagaggaaaggagagtcagagtaaccctgccttgctgattgaattgcatgctat 324
Query: 125 agtggcacaaatgtgttcgtgatttttgtttgttctctctctctctctctctctctctct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtggcacaaatgtgttcgtgatttttgtttgttctctctctctctctctctctctctct 384
Query: 185 ctctctctctctctctctctctctctctctctctttctctctctctttctctctctgttg 244
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 ctctctctctctctctctctctct----------------------ttctctctctgttg 422
Query: 245 ctgtaaatctccaacccaaatatgccccaga 275
|||||||||||||||||||||||||||||||
Sbjct: 423 ctgtaaatctccaacccaaatatgccccaga 453
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 99
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no364_e11.g1 MSMg01no364_e11.g1 CHROMAT_FILE:
MSMg01no364_e11.g1 PHD_FILE: MSMg01no364_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:20 2005
(420 letters)
>mm_chr1_163546496_163547315
Length = 820
Score = 789 bits (408), Expect = 0.0
Identities = 417/420 (99%)
Strand = Plus / Minus
Query: 1 ccatgaattttatattactaacaacagtataaagtgcttattatctctatacttctgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ccatgaattttatattactaacaacagtataaagtgcttattatctctatacttctgatc 733
Query: 61 atgaaactggatcagagatcaaatgttttgcctgttcattcattagtaaatggtagaact 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 732 atgaaactggatcagagatcaaatgttttgcctattcattcattagtaaatggtagaact 673
Query: 121 aggcttcatctccaggaaacttaggggcaaaagctggcacttaaaccccacttaacatta 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aggcttcatctccaggaaatttaggggcaaaagctggcacttaaaccccacttaacatta 613
Query: 181 cctaacagactattgccattgttcttaacaccactgggttttccagtggattcttaggag 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cctaacagactatcgccattgttcttaacaccactgggttttccagtggattcttaggag 553
Query: 241 cagcagcacacaacagcagagtgtttgttggagggaacattggtgatgccttcagatgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cagcagcacacaacagcagagtgtttgttggagggaacattggtgatgccttcagatgca 493
Query: 301 agtccgagaaggatgctggagcagtggctgtggacaatggaaaagcacagtgttgggtag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agtccgagaaggatgctggagcagtggctgtggacaatggaaaagcacagtgttgggtag 433
Query: 361 aacattccagtctcaggacgagaggacttagaaatgagggtggcaagtggattggacctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aacattccagtctcaggacgagaggacttagaaatgagggtggcaagtggattggacctt 373
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
