BAC Information

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BAC

Clone NameMSMg01-364I24
Chromosome1 (Build37)
Map Location 81,053,004 - 81,053,326
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092
Downstream gene9430031J16Rik, EG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364I24.T7 (MSMg01no364_i24.b1)MSMg01-364I24.TJ (MSMg01no364_i24.g1)
ACCAG472731AG472732
length779768
length of high quality
(start - end)		428 (54 - 481)427 (82 - 508)
definitionCHROMAT_FILE: MSMg01no364_i24.b1 PHD_FILE: MSMg01no364_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:43 2005CHROMAT_FILE: MSMg01no364_i24.g1 PHD_FILE: MSMg01no364_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:43 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNNCCCTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAAATGATATCTACTCACTGATAAGTGGATATTAGCCC
AGAAACTTAGTATACCCGAGATATAAGATACAATTTGCAAAACACATGAA
ACTGAAGAAGAACTAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAA
TTGGAAACAATTACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTG
AGACAAAAGGATGGACCATCTAGAGACTGCCATATCCAGGGATTCATCCT
GTAATTAGCCTCCAAACGATGACACCATTGTATACACTAGGAAGATTTTG
CTGAAAGGACCCTGATATAGCTGTCTCTTGTGATACTAGGCCGGGGCCTA
GCAAACACATAAGTAGATGCTCACAGTCAGCTATTGGATGGATCACAGGG
CCCCCAATGGAGGAGCTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGC
CACCCTGTAGGTGCCACAACATTATGAACTAACCAGTACCCTGGAGCTCT
TGACTCTAGCTTGCTAGGGAACAAAAGAAGGGCTAATCCGGCCCCCACTG
GAAAGAAAGGCCCATTGGACATGGCAAATTTTTTTTGCCCCCTACCCACG
AAAACCCAGGGGAAAAAAGGGAGAGGGGTGGTGGGTGAAAAATTCTTCCT
CCTTCTTTTGTCCTGCCATTGTTCCTTGCGTTTTGTCTTCTTCTTATCTT
TTTTTCTGCTCTTCCTCTCGGTCCATAGT

NNNNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGAGATCTACCTGACTC
TGCCTCTTTAGTCCTGAGCCAAGGCATACATCACCACACTTGGCTGTAAC
ATTGACTTTTGAAATCATGTTGTACATATCTGCTTTACTGGTATTTAAAA
TTTAAAGTATAAAATCTACTGAATATAGGAGATACATTAAGGTTTTCATT
ACCATTTTGGAGAAAATATTTTTTGAAAAATACATTAATTCTAAACTGCC
ACACACTGGAAAACATTTGGAGCAAAGGTCTATCAGTATTTCCACTGGCC
TCTTGTCAAGTACCTATTGATGTACCTACATTTCTAAAAATTAAGATAAT
TTTCTAATAAATCTGTTTTATGCTACAAAATGTCTAGCAAACACTGAAGA
TAGAAAAACAAATAACCTACCCAACAAGGAAGACAAGGAATACTGATGAA
TATCANAATATTCNAGACCTATAAAATATACAATTGACACGNCAGAGATT
CCTTACTATTTGTATCTATTATCTAACTTCTAATAGAACATAAATTCTGA
GCTGGTTCACCCCGCCAACTGAAAAAGAACTGGGACCTTAATGGATTTGA
ATCCATGCTCCCCACGGAAAAAGGAGTAAATATGGGCCTTTTTTTTCCCT
TGGCCAATGGCAGGACCAAAAGGCCCCAGGGTCTTTTTTTTTAAGGTGGT
GGCAAAAAAAACAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_i24.g1 MSMg01no364_i24.g1 CHROMAT_FILE:
MSMg01no364_i24.g1 PHD_FILE: MSMg01no364_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:43 2005
         (427 letters)



>mm_chr1_81052804_81053630
          Length = 827

 Score =  601 bits (311), Expect = e-176
 Identities = 320/323 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagagatctacctgactctgcctctttagtcctgagccaaggcatacatcaccacactt 60
           |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 523 aaagagatctgcctgactctgcctctttagtcctgagtcaaggcatacatcaccacactt 464

                                                                       
Query: 61  ggctgtaacattgacttttgaaatcatgttgtacatatctgctttactggtatttaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ggctgtaacattgacttttgaaatcatgttgtacatatctgctttactggtatttaaaat 404

                                                                       
Query: 121 ttaaagtataaaatctactgaatataggagatacattaaggttttcattaccattttgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttaaagtataaaatctactgaatataggagatacattaaggttttcattaccattttgga 344

                                                                       
Query: 181 gaaaatattttttgaaaaatacattaattctaaactgccacacactggaaaacatttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gaaaatattttttgaaaaatacattaattctaaactgccacacactggaaaacatttgga 284

                                                                       
Query: 241 gcaaaggtctatcagtatttccactggcctcttgtcaagtacctattgatgtacctacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gcaaaggtctatcagtatttccactggcctcttgtcaagtacctattgatgtacctacat 224

                                  
Query: 301 ttctaaaaattaagataattttc 323
           | |||||||||||||||||||||
Sbjct: 223 tcctaaaaattaagataattttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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