BAC Information

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BAC

Clone NameMSMg01-364P14
Chromosome1 (Build37)
Map Location 173,671,445 - 173,671,957
singlet/doubletsinglet
Overlap genenone
Upstream geneAtf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098
Downstream geneSlamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364P14.T7 (MSMg01no364_p14.b1)MSMg01-364P14.TJ (MSMg01no364_p14.g1)
ACCAG473042AG473043
length1,347769
length of high quality
(start - end)
---515 (81 - 595)
definitionCHROMAT_FILE: MSMg01no364_p14.b1 PHD_FILE: MSMg01no364_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:20 2005CHROMAT_FILE: MSMg01no364_p14.g1 PHD_FILE: MSMg01no364_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACGACATGCATTGCAGCTCTTTCCCTCCATNTGTTCTTTCGTTCACGTC
ACCCTACCTTTCCTTACTATCTCATGCTGGCTTCGCAGTATCGATTGCTA
ATCTTGTACTCTACGAAGAGCTAGTATCGTACTCACGTGCTCGGCAGGCG
CTCGTCTCTGCATTCTACCTGACTGCCCGCACGCAACGCAGCCGTCGGCC
GGCGNCGTTGCGACTTTCGTGGCTGTGCGCCGTAGTGTGTTCGCCTATCA
ACTCTACTTGTTCATCATTACTGTGCGTACTCACTGCCTCGTGTTTTCTC
ATTCTCTCTTCTCTACTGACGCACTCTCACTAAGCAGTAACGCGCGCTAA
TACACTAATATATACCAAGTGGAGGTCGGCTTTGCGTCGTATTCTCGACC
ATTTATCTCCTCCTCTACTTAATTTTGTTTCTCCTATTCTACCTCCAATG
TCGTCGAGTTACCAGGGTCGCTGTCGTCTTCCCTGCCCTCTCTTTTGTAG
CAGTCTGACTAACGTGACGACGTCGTAATTACTAGGATATAGAGCATGGT
TACTATTCTACTCCGAGTACGTCGGGCGTCCGTATGTCTATCCAACATTA
TTTGCCACTCTATCTACCCCATATATCCCTCCTTATATGACGGATCCGCC
CATAGTCCACACCCGCCACCCCGATCGCGGCGTACACCGTTCAATATATT
TCGATTACTGAGATCGCGGCTCCTTACGTATAAGACGACACCCCTTGTGC
GCGGCCGTCGTAGCGTAATTTGCGCCGAGCGATGCAGATGAGCGTGCATG
ATCCGCGTATCAACATCATTCATGGCGTCTCTTGCATGTCTGTGCCGGCT
ATTCGCTATCCGTCGATCGGTAATAANTGATGTCGGATTGATACTGGATA
TATGATNCGCACCAGTATGATGTCGCGCTGATCTATCTCTAATCGTCCCG
CGCGTGATCTTAAGCATCTATGGTTCGGTATCAGATGCTCTATCACTCTA
TCCAGTCATCGCTAGTGTCGCGTGTATGTCGCACACACCGCACCTGTTAT
ATGTTATCTATCANCGTAGCCTTCATGTCCTGTACACCCCACTTACGTCG
CATGTTGTTTGTCGCTATGTATATTCGCTCAATACGTTTGTGATTCTCCA
CACGATCGCCGCGCGTATGTACAGGCTACAGTCTATTCACATGGTAGCGC
GCGGTGTGCCNCCGGCACTACGGACTCTATGTGCNACACTGATTCTCTAA
GACGTGCACTATTTTGATTNTATCGTACTCTACAACACACTATCATTCCN
ATGCTATATCGCTCGCATAGNTTAGTCTGAANTACATGTNTACCGTT
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCTCACCCTGCAAAGTA
TTTCCTTTCCTATTTAGAATTATTTTTAAAGAATTTGTTTTCTCACATGC
AACTTTTAAATATCATCCTTCTACTTAAAGCTCCTCTCTACCTTTTTTTC
TATAAATTAAAACTTGAAAGAACTTTATAAAATTCCCGAGTTTAGATAAA
ATTACCCATATTCTTAATAAAATGGAACAATACTTAGCAACCATATATAT
ATAGCCAATCATATATATATATATATATATATATATATATATATATATAT
ATATAGCCTATAGACGTATAGCCCTACAGCTCAGAGAGCTGCATTTAAAA
CATAAACAGTGATAGGCCTTATATCTTATATATTTCACAGATATAAATAC
AAACACAGGTAAATTATATGTTAGTAGTCCTGGAGACATTTCTGCTTTGG
CTGACCCACAAATTAAATGAACTTATCTGTCACATCTTTACCTAAGTCAT
ATAAACTAAAAGGGCTTTTGGATGATTTAACAGTTCTAATTTGCATGAAT
ATTTATCTATAACCCAATCTTGTAGCATGTGATCCAAATATAAAAATGAA
CCCATGGAGACATTATTTATAACATACACCTATACACCGCCCGATAAAAC
CCCCAAATAAAAAAAAACCGGGAGAATTATAAGCTTTCTTTATAGGTCCT
ATTTTGCGTTTTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_p14.g1 MSMg01no364_p14.g1 CHROMAT_FILE:
MSMg01no364_p14.g1 PHD_FILE: MSMg01no364_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:20 2005
         (515 letters)



>mm_chr1_173671245_173672159
          Length = 915

 Score =  977 bits (505), Expect = 0.0
 Identities = 512/515 (99%), Gaps = 2/515 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttctcaccctgcaaagtatttcctttcctatttagaattatttttaaagaatttgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttctcaccctgcaaagtatttcctttcctatttagaattatttttaaagaatttgttt 260

                                                                       
Query: 61  tctcacatgcaacttttaaatatcatccttctacttaaagctcctctctacctttttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcacatgcaacttttaaatatcatccttctacttaaagctcctctctacctttttttc 320

                                                                       
Query: 121 tataaattaaaacttgaaagaactttataaaattcccgagtttagataaaattacccata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataaattaaaacttgaaagaactttataaaattcccgagtttagataaaattacccata 380

                                                                       
Query: 181 ttcttaataaaatggaacaatacttagcaaccatatatatatagccaatcatatatatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttaataaaatggaacaatacttagcaaccatatatatatagccaatcatatatatat 440

                                                                       
Query: 241 atatatatatatatatatatatatatatatatatagcctatagacgtatagccctacagc 300
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 441 atatatatatatatatatatatatatatatata--gcctatagacgtatagccctacagc 498

                                                                       
Query: 301 tcagagagctgcatttaaaacataaacagtgataggccttatatcttatatatttcacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcagagagctgcatttaaaacataaacagtgataggccttatatcttatatatttcacag 558

                                                                       
Query: 361 atataaatacaaacacaggtaaattatatgttagtagtcctggagacatttctgctttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atataaatacaaacacaggtaaattatatgttagtagtcctggagacatttctgctttgg 618

                                                                       
Query: 421 ctgacccacaaattaaatgaacttatctgtcacatctttacctaagtcatataaactaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctgacccacaaattaaatgaacttatctgtcacatctttacctaagtcatataaactaaa 678

                                              
Query: 481 agggcttttggatgatttaacagttctaatttgca 515
           ||| |||||||||||||||||||||||||||||||
Sbjct: 679 aggccttttggatgatttaacagttctaatttgca 713



 Score = 83.9 bits (43), Expect = 3e-20
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                      
Query: 232 tatatatatatatatatatatatatatatatatatatatatat 274
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tatatatatatatatatatatatatatatatatatatatatat 431



 Score = 81.9 bits (42), Expect = 1e-19
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                     
Query: 231 atatatatatatatatatatatatatatatatatatatatat 272
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atatatatatatatatatatatatatatatatatatatatat 431



 Score = 81.9 bits (42), Expect = 1e-19
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                     
Query: 234 tatatatatatatatatatatatatatatatatatatatata 275
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tatatatatatatatatatatatatatatatatatatatata 432



 Score = 66.5 bits (34), Expect = 4e-15
 Identities = 54/66 (81%), Gaps = 12/66 (18%)
 Strand = Plus / Minus

                                                                       
Query: 213 atatatatatagccaatcatatatatatatatatatatatatatatat-a-----tatat 266
           ||||||||||     || |||||||||||||||||||||||||||||| |     |||||
Sbjct: 472 atatatatat-----at-atatatatatatatatatatatatatatatgattggctatat 419

                 
Query: 267 atatat 272
           ||||||
Sbjct: 418 atatat 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 110
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 8
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)