TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTTTTTCTTGGGTTACCTCACTCAGGCTGATGCACTCCAGGTCCATC
CATTTGCCTAGAAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTA
CTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTCGTCTGTTGAGG
GGCATCTGGGTTCTTTCCAGCTTCTGGCTTTTATAAATAAGGCTAATATG
AACATAGTGGAGCATATGTCCTCCTTACCGGTTGGAAAAACTTTTGGATA
TATGCCCAGCATAGGTATTGTGGGATCTTCCGGTAGTACTATGTCCAATT
TTCTGAGGAACCTCCAGACTGATTTCTAGAGTGGTTGTACAAGCTTGCAA
TCCCACCAGCCATGGAGGAGTGTTCCTCTTTCTCCACATCCTCTCCAGCA
TCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGATGTGAGGT
GGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGCT
GAACATTTTTTAGGTACTTCTCAGCCATTCAGTATTCCTCAGGTGAGAAT
TCTTTGCTTAGCTCCGAGCCCCATTTTTTAATGGGGCTATTCGATATTCC
GCATTCCACCGTCCTGAGTCCTCAATATATAATGCATATCATGCCCCCAT
CCGAATTTAGGATACATTTAGTTCCTTTCTCCACTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAATGAAATCTGATGGAGAAAAGATTAACTATATATGTATATA
TAGTTATAGTTATAGTTATATATATACACACACATATATATAATTTACAC
ATACCTCTATATTTATTTTAAGTAGTACACATTGTTCACTGCTTCTTAAA
ATATATCTGTTTTGTGTACATGTTTTGTTTATTTTAAAACTTTAATATGA
AACATTCATATTATCACATTATTGTAAATGGAAGCCTAATTTATGAAACA
TAAGGCCTTGGCATAGTTTCCAATACCTTTCCTAGTGCTACCAAAACTTT
TGAGGGTGCCACATAGAACATTCTGGAAATCCAGGGTCATTATAAAGTTT
CTTTATCTTGTTAGGAAAATAATTCAAAGACTAACTCAGAAAGAAATTTG
AAGACAAATTTTACTAGAGTCTAAGGGAAAAAAATCAGTGAAGATAAGCT
ATAATCTTAGCAGCTGCAGGGAACAGAAAAAAAAATGAAGAAGATATATA
AAGAAAAGTCAGGACTGTANTGGTTGATGGTTGTGACTGCTGCTACCTTG
TTTCCTTCTCTGAACTGCTTGGCCACCTATTAGTTCTCATTAGCGGTAAT
GGTCAATAACTGCCTGACTATGGGTACTTGTCAGAAGGACTTAAAGGGAA
AAAAAATTGGGCTGGCCTTAAAAATTAAAAAGAACTCTTAC

Query= MSMg01no365_a14.g1 MSMg01no365_a14.g1 CHROMAT_FILE:
MSMg01no365_a14.g1 PHD_FILE: MSMg01no365_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:26 2005
         (484 letters)



>mm_chr1_50120409_50121291
          Length = 883

 Score =  878 bits (454), Expect = 0.0
 Identities = 474/484 (97%), Gaps = 7/484 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgaaatctgatggagaaaagattaactatatatgtatatatagttatagttatagtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 207 aaatgaaatctgatggagaaaagattaactatatatgtatatatagttatagttata--- 263

                                                                       
Query: 61  atatatatacacacacatatatataatttacacatacctctatatttattttaagtagta 120
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ---tatatacacacacatatatataatttacacatacctctatatttattttaagtagta 320

                                                                       
Query: 121 cacattgttcactgcttcttaaaatatatctgttttgtgtacatgttttgtttattttaa 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 cacattgttcactgcttcttaaaatatatttgttttgtgtacatgttttgtttattttaa 380

                                                                       
Query: 181 aactttaatatgaaacattcatattatcacattattgtaaatggaagcctaatttatgaa 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactttaatataaaacattcatattatcacattattgtaaatggaagcctaatttatgaa 440

                                                                       
Query: 241 acataaggccttggcatagtttccaatacctttcctagtgctaccaaaacttttgagggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acataaggccttggcatagtttccaatacctttcctagtgctaccaaaacttttgagggt 500

                                                                       
Query: 301 gccacatagaacattctggaaatccagggtcattataaagtttctttatcttgttaggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccacatagaacattctggaaatccagggtcattataaagtttctttatcttgttaggaa 560

                                                                       
Query: 361 aataattcaaagactaactcagaaagaaatttgaagacaaattttactagagtctaaggg 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataattaaaagactaactcagaaagaaatttgaagacaaattttactagagtctaaggg 620

                                                                       
Query: 421 aaaaaaatcagtgaagataagctataatcttagcagctgcagggaacagaaaaaaaaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 aaaaaaatcagtgaagataagctataatcttagcagctgcagggaacagaaaaaaaa-tg 679

               
Query: 481 aaga 484
           ||||
Sbjct: 680 aaga 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 883
Length adjustment: 10
Effective length of query: 474
Effective length of database: 873
Effective search space:   413802
Effective search space used:   413802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)