BAC Information

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BAC

Clone NameMSMg01-365C09
Chromosome1 (Build37)
Map Location 137,222,389 - 137,376,588
singlet/doubletdoublet
Overlap geneLmod1, Tmem58, Ipo9, Nav1
Upstream genePpfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a
Downstream geneEG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365C09.T7 (MSMg01no365_c09.b1)MSMg01-365C09.TJ (MSMg01no365_c09.g1)
ACCAG473174AG473175
length816721
length of high quality
(start - end)		338 (62 - 399)543 (58 - 600)
definitionCHROMAT_FILE: MSMg01no365_c09.b1 PHD_FILE: MSMg01no365_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:34 2005CHROMAT_FILE: MSMg01no365_c09.g1 PHD_FILE: MSMg01no365_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,376,251 - 137,376,588)(137,222,389 - 137,222,931)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGTCTACCAGTGAGCTAAGTGCCTGCTATTTCAAGATACCATACAAGCA
AGATAGACGAGATTCAGTCCCAGCCCTCAGAGAAGTGGGACAACTGTGCA
AGACATGGCATTTGGTCTTAACCTTGAAGAAAGGCCAGATGTCCATGTGA
GACGGACAGAGCTTGTATCCACTGATGGGAAAACCCTGGGTCAATGCCTG
GACTCCAGAATCTTCGTTAGGACCCAAGTCATTGCACTGTGAGAGCAGAA
CCAGATTCCCCTGTGGCGACTGCGTTCCCTGTGATCCAGTGAGATAACTG
GTCATCTAGGGGAAGGAGAGGGAAATAGAAGCGGGGGCGGGGGGGGGGGT
ACCTATCACGTCCGTATTTTTGTCGCTTTCTTTTTCCTTCCCCCTCTCCT
CTCTTTTCCCCTTCCCCCTCTCTCCCCTTTTTCGTTCCCCTCCTTTCTCC
CCTTCTTTTCCCTTTCTTCCCTTTTTTCCTCCCCCCGCTTCCCTTATCTT
CTTTCCTATTTGCCCCTCCCTACCCCCCCTTTTTTCCCTTCCCCTTTTTC
CCCTTTTCCTTACCCCCTTTTCGTGATTTCCTTATCTCCACTATTCACCC
GCATCACCTATTTCTATTGTTATTTTCTTCTTTCCACCACCTCTTTCTCC
CTCGCCCCTTTTCTTTATTTCTCCCCCTTCTTTTCCCATTTCTTCCCCCC
CTTTTTATATCCTCTTTTTTATTTTCCTTCCTTCCTTTTTTTCTCCTTCC
ATTATCTTTTTCCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTACCCCATGGGCAGGGTGGTTATTTCTTTTAAAGCTTTGATA
ATGATGAATAAATATAAATCCAGGTATGGGGGCCTGTCTTTGAGGGGCTG
GGGACGCAGGACAGGAACCAGAGAAATGAAATTCAGTCAAGGTCTTGATG
CTTTTGTAACAGCATCCCCCCTCTTGCCCTCTCTCTGGGGCAACACCCAC
CCCCCAAAACATTCTCTCTGAAGCTTGGTTTTGTTCCTCTCTTCCGTCCC
CCAGGCTCTGGGCCCAGTGGCTGACTTGCATCTGTGACTTCTGGAGACTG
AGGTCAAACAGAACTGTTTTCAGCCCTGGGAACCAAACTCAGGGCCTCTC
ACATGCCATGGGAGGGTGCCACCTTTGAGCTATGCAGTCCTAAAACTCAA
GCCCTTACTTAATTATAAAGCAAGATGTTTAGGTCAAAGAGCACAGAGGG
ACTCTTGCACTCCTGGGACTTTCATTCTCCAGTGTTTCTGCTCTTAGTAA
ATACTGTGCCCCGACTCTCTCCTCTCTCTCCCCCAGGTTCCTGGCTTTGC
CCAGGGATGTACTTATTTCTCCAAATGGAGCCCAGTCAAGCAATAGAGGG
TGAGGGGAAAAGAAGTCTTTGGTCNGAGGTGTTGCCTTCAGGACCATTCT
TGCCCCTCGGAAAAAAATGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_c09.b1 MSMg01no365_c09.b1 CHROMAT_FILE:
MSMg01no365_c09.b1 PHD_FILE: MSMg01no365_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:34 2005
         (338 letters)



>mm_chr1_137376051_137376788
          Length = 738

 Score =  646 bits (334), Expect = 0.0
 Identities = 337/338 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagctaagtgcctgctatttcaagataccatacaagcaagatagacgagattcagtccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tgagctaagtgcctgctatttcaagataccatacaagcaagatagacgagattcagtccc 479

                                                                       
Query: 61  agccctcagagaagtgggacaactgtgcaagacatggcatttggtcttaaccttgaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agccctcagagaagtgggacaactgtgcaagacatggcatttggtcttaaccttgaagaa 419

                                                                       
Query: 121 aggccagatgtccatgtgagacggacagagcttgtatccactgatgggaaaaccctgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aggccagatgtccatgtgagacggacagagcttgtatccactgatgggaaaaccctgggt 359

                                                                       
Query: 181 caatgcctggactccagaatcttcgttaggacccaagtcattgcactgtgagagcagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 caatgcctggactccagaatcttcgttaggacccaagtcattgcactgtgagagcagaac 299

                                                                       
Query: 241 cagattcccctgtggcgactgcgttccctgtgatccagtgagataactggtcatctaggg 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 cagattcccctgcggcgactgcgttccctgtgatccagtgagataactggtcatctaggg 239

                                                 
Query: 301 gaaggagagggaaatagaagcgggggcggggggggggg 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gaaggagagggaaatagaagcgggggcggggggggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no365_c09.g1 MSMg01no365_c09.g1 CHROMAT_FILE:
MSMg01no365_c09.g1 PHD_FILE: MSMg01no365_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:34 2005
         (543 letters)



>mm_chr1_137222189_137223131
          Length = 943

 Score = 1042 bits (539), Expect = 0.0
 Identities = 542/543 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaccccatgggcagggtggttatttcttttaaagctttgataatgatgaataaatataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaccccatgggcagggtggttatttcttttaaagctttgataatgatgaataaatataa 260

                                                                       
Query: 61  atccaggtatgggggcctgtctttgaggggctggggacgcaggacaggaaccagagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccaggtatgggggcctgtctttgaggggctggggacgcaggacaggaaccagagaaat 320

                                                                       
Query: 121 gaaattcagtcaaggtcttgatgcttttgtaacagcatcccccctcttgccctctctctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaattcagtcaaggtcttgatgcttttgtaacagcatcccccctcttgccctctctctg 380

                                                                       
Query: 181 gggcaacacccaccccccaaaacattctctctgaagcttggttttgttcctctcttccgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggcaacacccaccccccaaaacattctctctgaagcttggttttgttcctctcttccgt 440

                                                                       
Query: 241 cccccaggctctgggcccagtggctgacttgcatctgtgacttctggagactgaggtcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccccaggctctgggcccagtggctgacttgcatctgtgacttctggagactgaggtcaa 500

                                                                       
Query: 301 acagaactgttttcagccctgggaaccaaactcagggcctctcacatgccatgggagggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagaactgttttcagccctgggaaccaaactcagggcctctcacatgccatgggagggt 560

                                                                       
Query: 361 gccacctttgagctatgcagtcctaaaactcaagcccttacttaattataaagcaagatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccacctttgagctatgcagtcctaaaactcaagcccttacttaattataaagcaagatg 620

                                                                       
Query: 421 tttaggtcaaagagcacagagggactcttgcactcctgggactttcattctccagtgttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttaggtcaaagagcacagagggactcttgcactcctgggactttcattctccagtgttt 680

                                                                       
Query: 481 ctgctcttagtaaatactgtgccccgactctctcctctctctcccccaggttcctggctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 ctgctcttagtaaatactgtgccccgactctctcctctctctcccccagtttcctggctt 740

              
Query: 541 tgc 543
           |||
Sbjct: 741 tgc 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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