Query= MSMg01no365_c11.b1 MSMg01no365_c11.b1 CHROMAT_FILE:
MSMg01no365_c11.b1 PHD_FILE: MSMg01no365_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:35 2005
(483 letters)
>mm_chr1_69710606_69711488
Length = 883
Score = 895 bits (463), Expect = 0.0
Identities = 478/483 (98%)
Strand = Plus / Plus
Query: 1 gacaagagagcaagccaactaatccacgagaccatgtttattatctactgtattgaggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacaagagagcaagccaactaatccacgagaccatgtttattatctactgtattgaggct 260
Query: 61 accacagtaaacaagactgataatggtcctcaagtaagtactgggaggaaaaaaaagaca 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 accacagtaaacaagactgataatggtcctcaagtaagtactgggagaaaaaaaaagaca 320
Query: 121 taaattcaattatttcagacagtgtgaagtgaatcaaattgggaaatattaacaaatata 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaattcaattatttcagacagtgtgaagtgaatcaaattgggaaatattaacaaatatc 380
Query: 181 taggaagggcttatattactactgagcttcagtcaagaggcaactaaagaaatgagttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggaagggcttatattactactgagcttcagtcaagaggcaactaaagaaatgagttaa 440
Query: 241 caaagatttacatcttcagtgaagtcacagcaagtgttgagaggggaattaatttgtctc 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaagaaagacatcttcagtgaagtcacagcaagtgttgagaggggaattaatttgtctc 500
Query: 301 atcaagagatagaaagcaggaaagaatgaatagaaaggggaccttacagactttgagaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcaagagatagaaagcaggaaagaatgaatagaaaggggaccttacagactttgagaac 560
Query: 361 tgacttgcatttattctgcttcaatgcaaagttcttacaccattcacagaaatggagctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgacttgcatttattctgcttcaatgcaaagttcttacaccattcacagaaatggagctg 620
Query: 421 cggcctgattctggcttaggaagtccagctctctggactttagagattattggcaatgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cggcctgattctggcttaggaagtccagctctctggactttagagattattggcaatgag 680
Query: 481 gaa 483
|||
Sbjct: 681 gaa 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_c11.g1 MSMg01no365_c11.g1 CHROMAT_FILE:
MSMg01no365_c11.g1 PHD_FILE: MSMg01no365_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:35 2005
(528 letters)
>mm_chr1_69915318_69916244
Length = 927
Score = 975 bits (504), Expect = 0.0
Identities = 522/528 (98%), Gaps = 1/528 (0%)
Strand = Plus / Minus
Query: 1 tctttatctatattggatagctaacaacatgctgcttccttgagcttttctcactctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tctttatctatattggatagctaacaacatgctgcttccttgagcttttctcactctgaa 668
Query: 61 aaaaatgaactgacctggatagcagacacactacactaggatctgaagggaggaaatata 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 667 aaaaatgaactgacctggatagcagacacactacattaggatctgaagggaggaaatata 608
Query: 121 cttttatgtgtcacaaatattacaaaaattgagatttacataaatgcacacagataagct 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 607 cttttatgtgtcacaaatattac-aaaattgagatttacataaatgcacacagataagct 549
Query: 181 tcaggggtaagctatgtcagaagattctgtaaggaacagtgtctggggcactgccaagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tcaggggtaagctatgtcagaagattctgtaaggaacagtgtctggggcactgccaagga 489
Query: 241 attttgtgggttaggtctccaggttcctgatggaacatatgttgatcagtaggacttctg 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 attttgtgggtaaggtctccaggttcctgatggaacatatgttgatcagtaggacttctg 429
Query: 301 gccatcaaacaaaattatacatggtgtgtggtcaaagagttaatgaatctaactttctcc 360
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 428 gccatcaaacaaaattatagatggtgtgtggtcaaagagttaatgaatctaactttcttc 369
Query: 361 tccctaatctttcaattcctttttggataagctttattgatctttactaagaaattttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tccctaatctttcaattcctttttggataagctttattgatctttactaagaaattttga 309
Query: 421 gttcgcatcacacataaaataagtaagcactttccaataaacacaacactaacaatgatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gttcgcatcacacataaaataagtaagcactttccaataaacacaacactaacaatgatc 249
Query: 481 atcttccaccccagcttcaacttcatattcatgcaaactttggggtat 528
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 248 atcttccaccccagcttcaacttcatattcatgccaactttggggtat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 927
Length adjustment: 10
Effective length of query: 518
Effective length of database: 917
Effective search space: 475006
Effective search space used: 475006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
