BAC Information

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BAC

Clone NameMSMg01-365C20
Chromosome1 (Build37)
Map Location 137,528,805 - 137,597,426
singlet/doubletdoublet
Overlap geneLOC623327
Upstream geneJarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714
Downstream geneCsrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365C20.T7 (MSMg01no365_c20.b1)MSMg01-365C20.TJ (MSMg01no365_c20.g1)
ACCAG473196AG473197
length758720
length of high quality
(start - end)		509 (36 - 544)482 (56 - 537)
definitionCHROMAT_FILE: MSMg01no365_c20.b1 PHD_FILE: MSMg01no365_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:36 2005CHROMAT_FILE: MSMg01no365_c20.g1 PHD_FILE: MSMg01no365_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,528,805 - 137,529,310)(137,596,945 - 137,597,426)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACAT
TTGCATCCTCAGGCATCAGGAGAGACAATGACACACTGGCCAGGCTAGAG
CATCAGAGACCCCAGAGCCCATTCCCAGTGACACACTTTCTCTGACAAGG
CCATACCCACTCCAGCAAGGCCACACCTCCCAATAGTGCCACTCCCTATG
AGCCTATGGAGCCATTTTCATGCAAACTACCCCACTTGCCCATAGGCGTG
CTTCATAGTTGTTGGCTCTGATTACAAGGTCACTTCTGCAGCCCTTGGGC
TAAACCAGAGTTCCTTCTGTGTGTTGTTAAAACTCATCCTACCTGTTCAG
TCTCTTCCCACAGGGCTGTAAGTTCAATGGGGGCATTCTAGAAGCCCATC
ACTACCTCCCACAACCCTGTTGTGTGGTCAATAAATACGGTTAAATAGAT
AACTACACAAAGTACTTTGGGAATGACCAAAAAGGGAAGCTTGGGGCTGA
CGAGATGGCTCTGCAGTTAAGGGCACTGACTGCTCTTCCAGAGGTCCTGA
GTTCAATTCCCAGCAACCACACAGTGGCTCACAACCATCTGTAATGGGAT
CTGACCCTCTCTTCTGGTGTGCCCGAAAGCAGTATACTCCCCTATATAAA
ATAAATAAATCTTTTTTCATAAAAACGCAGGATAGTCTGTACTAAATATA
TGCGTTGTGTATGCGCGACTCATAAACTCCTATCCTTTCCTACTTCTGAA
TCCCTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGTGCAGTACCCAGAGGAGGCCACACGGTGGCAGCGTAGAGGACT
GCGTATACACCCTCAATGGTGTTTAGTGTTCAGTAGGGGTGAACGCAGGT
TCTTGTTAACCCAGTTCTGGGTAGAGAAAGAGACTTAGCAATGGGTGGCT
TTTGCGTCTGCCTGGGGCCTCTGGACTGCGTTTGTTGGAACTGGCAGGGC
CCTAATTGCCCCTTGGGTCCCTGTGATTATTTCAGTAGAGATCCTGGGAT
AGTTGGGTTCTGTGTTTTGCCTGTTTGTAAAATGAGTTTGAAAAAAAAGT
TCAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC
GAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACC
CGTGATGAGATCTGATGCCTCTTCTGGTGCGTCTGAGGACAGCTGCAGTG
TACTTACATATAATAAATAAATAAATAAATCTTTAAAAAAAAAGAAAAAA
GATAAAGAAAAAAAAGTTCAGACCGGATGCAAATACTCTAGATGCCAGGT
TTCTTAGCAGGAGGCACCCAGATACCATGATAGCAACATCTCTCACAGAA
AGGAAGGTAATATGTCACAGCACCCGAAATCAAGCTGAAATACAAAGTCT
CTGTGCTGAAATAAGGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_c20.b1 MSMg01no365_c20.b1 CHROMAT_FILE:
MSMg01no365_c20.b1 PHD_FILE: MSMg01no365_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:36 2005
         (509 letters)



>mm_chr1_137528602_137529510
          Length = 909

 Score =  971 bits (502), Expect = 0.0
 Identities = 505/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctacatttgcatcctcaggcatcaggagagacaatgacacactggccaggctag 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctacatttggatcctcaggcatcaggagagacaatgacacactggccaggctag 263

                                                                       
Query: 64  agcatcagagaccccagagcccattcccagtgacacactttctctgacaaggccataccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agcatcagagaccccagagcccattcccagtgacacactttctctgacaaggccataccc 323

                                                                       
Query: 124 actccagcaaggccacacctcccaatagtgccactccctatgagcctatggagccatttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actccagcaaggccacacctcccaatagtgccactccctatgagcctatggagccatttt 383

                                                                       
Query: 184 catgcaaactaccccacttgcccataggcgtgcttcatagttgttggctctgattacaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catgcaaactaccccacttgcccataggcgtgcttcatagttgttggctctgattacaag 443

                                                                       
Query: 244 gtcacttctgcagcccttgggctaaaccagagttccttctgtgtgttgttaaaactcatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtcacttctgcagcccttgggctaaaccagagttccttctgtgtgttgttaaaactcatc 503

                                                                       
Query: 304 ctacctgttcagtctcttcccacagggctgtaagttcaatgggggcattctagaagccca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctacctgttcagtctcttcccacagggctgtaagttcaatgggggcattctagaagccca 563

                                                                       
Query: 364 tcactacctcccacaaccctgttgtgtggtcaataaatacggttaaatagataactacac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcactacctcccacaaccctgttgtgtggtcaataaatacggttaaatagataactacac 623

                                                                       
Query: 424 aaagtactttgggaatgaccaaaaagggaagcttggggctgacgagatggctctgcagtt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaagtactttgggaatgaccaaaaagggaagcttggggctgacgagatggctctgcagtt 683

                                     
Query: 484 aagggcactgactgctcttccagagg 509
           ||||||||||||||||||||||||||
Sbjct: 684 aagggcactgactgctcttccagagg 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no365_c20.g1 MSMg01no365_c20.g1 CHROMAT_FILE:
MSMg01no365_c20.g1 PHD_FILE: MSMg01no365_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:36 2005
         (482 letters)



>mm_chr1_137596929_137597810
          Length = 882

 Score =  932 bits (482), Expect = 0.0
 Identities = 482/482 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgcagtacccagaggaggccacacggtggcagcgtagaggactgcgtatacaccctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agtgcagtacccagaggaggccacacggtggcagcgtagaggactgcgtatacaccctca 439

                                                                       
Query: 61  atggtgtttagtgttcagtaggggtgaacgcaggttcttgttaacccagttctgggtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atggtgtttagtgttcagtaggggtgaacgcaggttcttgttaacccagttctgggtaga 379

                                                                       
Query: 121 gaaagagacttagcaatgggtggcttttgcgtctgcctggggcctctggactgcgtttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaaagagacttagcaatgggtggcttttgcgtctgcctggggcctctggactgcgtttgt 319

                                                                       
Query: 181 tggaactggcagggccctaattgccccttgggtccctgtgattatttcagtagagatcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tggaactggcagggccctaattgccccttgggtccctgtgattatttcagtagagatcct 259

                                                                       
Query: 241 gggatagttgggttctgtgttttgcctgtttgtaaaatgagtttgaaaaaaaagttcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gggatagttgggttctgtgttttgcctgtttgtaaaatgagtttgaaaaaaaagttcagg 199

                                                                       
Query: 301 gctggtgagatggctcagtgggtaagagcacccgactgctcttccgaaggtccgaagttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gctggtgagatggctcagtgggtaagagcacccgactgctcttccgaaggtccgaagttc 139

                                                                       
Query: 361 aaatcccagcaaccacatggtggctcacaaccacccgtgatgagatctgatgcctcttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aaatcccagcaaccacatggtggctcacaaccacccgtgatgagatctgatgcctcttct 79

                                                                       
Query: 421 ggtgcgtctgaggacagctgcagtgtacttacatataataaataaataaataaatcttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  ggtgcgtctgaggacagctgcagtgtacttacatataataaataaataaataaatcttta 19

             
Query: 481 aa 482
           ||
Sbjct: 18  aa 17


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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