BAC Information

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BAC

Clone NameMSMg01-365D04
Chromosome1 (Build37)
Map Location 66,528,964 - 66,701,528
singlet/doubletdoublet
Overlap geneC030018G13Rik
Upstream geneEG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786, Mtap2
Downstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365D04.T7 (MSMg01no365_d04.b1)MSMg01-365D04.TJ (MSMg01no365_d04.g1)
ACCAG473212AG473213
length738746
length of high quality
(start - end)		558 (42 - 599)574 (57 - 630)
definitionCHROMAT_FILE: MSMg01no365_d04.b1 PHD_FILE: MSMg01no365_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:38 2005CHROMAT_FILE: MSMg01no365_d04.g1 PHD_FILE: MSMg01no365_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,700,974 - 66,701,528)(66,528,964 - 66,529,537)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTATGATCCTTTAAAAACTGCTAGAAATCAGCTACTAGGTCCTCTGGGA
TCACATTTAAAAATCTGCCAGACAGTAAGTTACAGACTGAATTCCCATTT
TTAAAACATTTTCTATTTCTGAGATCTCTTTAATAGATAAAATGTGTACT
TTACCAGAAGGATCTAAATGGTATGTACCCAAGTCACAGGAAACAAATTA
TTCTAAGAATCTCCTTCCTTTTCCTGGAGGAAGCCTTCCCACTCCCAGAG
CATCCCCCACTTCCTGGTTCATCCCAGCACACAGACACAGACACATGGCT
TAAGCTCTTAGCATCCCAGGCAGAGGTGAGGCACTTGCGTGGGTACCTCA
TGTGAGACTTCACATCCAGCAGCTCCAGGGCAGTGACCCGTGGCTCCCCA
GCTAGGTTTTGCAGGATCTTCAGCCTCGGCCCGCAGTGCTTATAGAATTC
CGTGCAAATGTTCAGCAGAGATTCCCGGGGTCTTCTGAATTCTTCTCGAG
AAATTCGTTCATCTAGTTCTTCTCTGGGAAGGCCTTGTCCTTCCTCTAGA
AAATGGAGGNTTTCCCTGTGGGATTGGGAAAGATAACTAGGATTCGAGAA
CAAGGGCACTTGGTTACTAGAGCGAAGGGTGTCCATTGGCGAAAAAAACG
CTTCCCCCAAACCTGGTAAGTGTAGGACGGCTCTTCCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTGGGTCTCAGATGTTTTCACTCATCCGTGTTCACATTCCCTGC
TTCCACGTTCACTTTTTTATTTAATGATATGAGATGCTTAAGATGCAATC
TTATAATTTGCTTGGACCTCTACCATATGAGGCTGCATTTTCAAATACTG
AAGCCTCTCAATATGATACAATAATGAAGCATAGAATGTGTTTCTGGAAG
AAGCTTTCAATTACAAATAAACAGGACATGCATGGGTGTAAAACCTGCCG
CATTTAACACATTTATTGAGTATCTTTGTGCACACAGTTCCCCATCTGCT
TTAAGTGCTGTGACCATGCTGAGGTAGGCAGGAAAGGGGATTTGTCAACT
AGCCCTGGCCTTGAAGCATTAAGGATTTTTAAGAGAACATTACAAAATCA
CTCACTATAAAGAGTCAAAATATATTTACCTGATTCTGTGAAATACAAGA
AAGAGAGAAGCACTGAAGACTAGGAGGTCAAAGTAGCCAGGCTGTGAGGA
TATTGCTTTCTGAGGGAAGAATAAGTACGATTACATAATTAAGAGGAACA
GCACTGTATCCAAGCATTAAGGGAGCTGCCAAGACTATGGAAATAAACAG
ATCTCCCTCACTGCAAGCAAAACATGGGTTGTGTGTTTCAGGCTTTTTCC
CAAGCTACCTTGGATTAATCTCTCATTTTCCCTAAGGAGGTCACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_d04.b1 MSMg01no365_d04.b1 CHROMAT_FILE:
MSMg01no365_d04.b1 PHD_FILE: MSMg01no365_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:38 2005
         (558 letters)



>mm_chr1_66700771_66701728
          Length = 958

 Score = 1065 bits (551), Expect = 0.0
 Identities = 554/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttatgatcctttaaaaactgctagaaatcagctactaggtcctctgggatcac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ggaattcttatgatcctttaaaaactgctagaaatcagctactaggtcctctgggatcac 699

                                                                       
Query: 64  atttaaaaatctgccagacagtaagttacagactgaattcccatttttaaaacattttct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 atttaaaaatctgccagacagtaagttacagactgaattcccatttttaaaacattttct 639

                                                                       
Query: 124 atttctgagatctctttaatagataaaatgtgtactttaccagaaggatctaaatggtat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 atttctgagatctctttaatagataaaatgtgtactttaccagaaggatctaaatggtat 579

                                                                       
Query: 184 gtacccaagtcacaggaaacaaattattctaagaatctccttccttttcctggaggaagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gtacccaagtcacaggaaacaaattattctaagaatctccttccttttcctggaggaagc 519

                                                                       
Query: 244 cttcccactcccagagcatcccccacttcctggttcatcccagcacacagacacagacac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cttcccactcccagagcatcccccacttcctggttcatcccagcacacagacacagacac 459

                                                                       
Query: 304 atggcttaagctcttagcatcccaggcagaggtgaggcacttgcgtgggtacctcatgtg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 atggcttaagctcttagcatcccaggcagaggtgaggcacttgcgtgggtacctcatgtg 399

                                                                       
Query: 364 agacttcacatccagcagctccagggcagtgacccgtggctccccagctaggttttgcag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agacttcacatccagcagctccagggcagtgacccgtggctccccagctaggttttgcag 339

                                                                       
Query: 424 gatcttcagcctcggcccgcagtgcttatagaattccgtgcaaatgttcagcagagattc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gatcttcagcctcggcccgcagtgcttatagaattccgtgcaaatgttcagcagagattc 279

                                                                       
Query: 484 ccggggtcttctgaattcttctcgagaaattcgttcatctagttcttctctgggaaggcc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ccggggtcttctgaattcttctcgagaaattcgttcatctagttcttctctgggaaggcc 219

                          
Query: 544 ttgtccttcctctag 558
           ||| |||||||||||
Sbjct: 218 ttgcccttcctctag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no365_d04.g1 MSMg01no365_d04.g1 CHROMAT_FILE:
MSMg01no365_d04.g1 PHD_FILE: MSMg01no365_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:38 2005
         (574 letters)



>mm_chr1_66528764_66529737
          Length = 974

 Score = 1110 bits (574), Expect = 0.0
 Identities = 574/574 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgggtctcagatgttttcactcatccgtgttcacattccctgcttccacgttcactttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgggtctcagatgttttcactcatccgtgttcacattccctgcttccacgttcactttt 260

                                                                       
Query: 61  ttatttaatgatatgagatgcttaagatgcaatcttataatttgcttggacctctaccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatttaatgatatgagatgcttaagatgcaatcttataatttgcttggacctctaccat 320

                                                                       
Query: 121 atgaggctgcattttcaaatactgaagcctctcaatatgatacaataatgaagcatagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaggctgcattttcaaatactgaagcctctcaatatgatacaataatgaagcatagaa 380

                                                                       
Query: 181 tgtgtttctggaagaagctttcaattacaaataaacaggacatgcatgggtgtaaaacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgtttctggaagaagctttcaattacaaataaacaggacatgcatgggtgtaaaacct 440

                                                                       
Query: 241 gccgcatttaacacatttattgagtatctttgtgcacacagttccccatctgctttaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccgcatttaacacatttattgagtatctttgtgcacacagttccccatctgctttaagt 500

                                                                       
Query: 301 gctgtgaccatgctgaggtaggcaggaaaggggatttgtcaactagccctggccttgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgtgaccatgctgaggtaggcaggaaaggggatttgtcaactagccctggccttgaag 560

                                                                       
Query: 361 cattaaggatttttaagagaacattacaaaatcactcactataaagagtcaaaatatatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattaaggatttttaagagaacattacaaaatcactcactataaagagtcaaaatatatt 620

                                                                       
Query: 421 tacctgattctgtgaaatacaagaaagagagaagcactgaagactaggaggtcaaagtag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacctgattctgtgaaatacaagaaagagagaagcactgaagactaggaggtcaaagtag 680

                                                                       
Query: 481 ccaggctgtgaggatattgctttctgagggaagaataagtacgattacataattaagagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaggctgtgaggatattgctttctgagggaagaataagtacgattacataattaagagg 740

                                             
Query: 541 aacagcactgtatccaagcattaagggagctgcc 574
           ||||||||||||||||||||||||||||||||||
Sbjct: 741 aacagcactgtatccaagcattaagggagctgcc 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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