ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTGGTCTTACCACGTTCCCCATCATCCTGAAGCAGCTGGTCTGATA
GAAAGATGGAATGGCCTTTTGAAGACGCAGTTACAGCGCCAATTAGGTGG
TAACAGCTTGGAAGGCTGGGGCAGAGTTCTTCAGAAGGCAGTATATGCTT
TGAATCAGCGCTCGATATATGGTACAGTTTCACCCATAGCCAGGATTCAT
GGGTCCAGGAATCAAGGGGTGGAAAAAGGAATAGTTCCACTTACTATCAC
TCCTAGTGACCCTCTAGGAAAATTTTTGCTTCCTGTCCCCATAACTCTAG
GTTCTGCTGGCCTAGAAGTTTTGGCTCCAGAGAGGGGAGTGCTTCTACCA
GGAGCTACAACAAACATTCCATTGAACTGGAAGCTCAGACTTCCCCCTGG
TCATTTTGGGCTTCTTATGCCCTTAAACCAACAGGCTAAAAAAGGAATAA
CAGTGTTAGGAGGGGTGATAGATCCAGATTACCATGGAGAAATTGGATTA
CCTCTTCACAATGGTGGTAAGCAAGATTATGTCTGGAGTGTAGGAGACCC
CTTAGGGCGTCTCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGA
AAATACAACAGCCTTATCCCAGCANGATGACAAGAACGCAACCCCTCAGG
AAATGAGGATGGGTCAATCCTCCAGGAAAGAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATAGCCACTGTGGCTCAAGATCTTCAAACCAAGATCCAGATAA
GGATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGCCTTCCAATTCCGG
ATTGTAATTCATTCCAAATATTGTCAAGTTGACAACCAGGAATAGCCACT
ACACTAATAAAGGATGAAAGCAAAATTCACTAATGGGTAGACATGTCAGT
ATTTAAAAGACAATGAAATGGTACCAGTCCACATAAGCAGTATTCCAGTT
TCCAAACTATGACTTTTCTGTAGAGCATAACCCATCACATACATAGTTTG
TATAAATAAAATGTGTTTCCATTGCCTTAAAGATTGTATTATTCATTTCA
TATGTTGTTCCAATAAGGGCCTCATAAGATCAGGTAATTGCTAGAGTGTT
GATCTTTATACTCAGTACTTTGTTTACAATTTTTCTTTAGATGACTGCTA
TCACTATATTGTCCAGCATTGAAGTAACTTCATATAACACACACACACAC
ACACACACACACACACACACACTCACACATACACACATAAACATACATAC
ACATGCATACTATATCTACATACACNTGTGTGTGTGTGTGTGTGTGTGTG
TGTNNNNNNNNNCCTNNNATGNAAATGGAAGCTTGAAAAATTACTTTTCT
TCCCAAATCGAAAATTTTGGCCTGGTTACAGAA

Query= MSMg01no365_d15.g1 MSMg01no365_d15.g1 CHROMAT_FILE:
MSMg01no365_d15.g1 PHD_FILE: MSMg01no365_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:40 2005
         (539 letters)



>mm_chr1_29589269_29590207
          Length = 939

 Score =  696 bits (360), Expect = 0.0
 Identities = 380/394 (96%), Gaps = 12/394 (3%)
 Strand = Plus / Plus

                                                                       
Query: 146 actaataaaggatgaaagcaaaattcactaatgggtagacatgtcagtatttaaaagaca 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 actaataaaggatgaaagcaaaattcactaatgggtagacatgtcagtatttaaaagaca 405

                                                                       
Query: 206 atgaaatggtaccagtccacataagcagtattccagtttccaaactatgacttttctgta 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 atgaaatggtaccagtccacataagcagtattccagtttccaaactatgacttttctgta 465

                                                                       
Query: 266 gagcataacccatcacatacatagtttgtataaataaaatgtgtttccattgccttaaag 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gagcataacccatcacatacatagtttgtataaataaaatgtgtttccattgccttaaag 525

                                                                       
Query: 326 attgtattattcatttcatatgttgttccaataagggcctcataagatcaggtaattgct 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 attgtattattcatttcatatgttgttccaataagggcctcataagatcaggtaattgct 585

                                                                       
Query: 386 agagtgttgatctttatactcagtactttgtttacaatttttctttagatgactgctatc 445
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agagtgttgatctttatcctcagtactttgtttacaatttttctttagatgactgctatc 645

                                                                       
Query: 446 actatattgtccagcattgaagtaacttcatataacacacacacacacacacacacacac 505
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  
Sbjct: 646 actatattgtccagcattgaagtaacttcatataacacacatacacacacacacacac-- 703

                                             
Query: 506 acacacacactcacacatacacacataaacatac 539
                     ||||||||||||||||||||||||
Sbjct: 704 ----------tcacacatacacacataaacatac 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)