XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGATTTCTCCTTTCAATATTTACCTTTTCTATTTAGTATTCAACATTCA
CTAAATGAATCCTTGAGAGGTTAGCCTCATGTTTATATTTTTTATACTAG
AAAAAACAAACATATTTTAATCTATTTAAATACATCAATTTGGGTTCACT
AAAATGCCAGAGAAGTCTCAATATTCCTAAATCATCATCTTTATCATCAT
CTTTATTATCATCAACATCATTACTGAAGTATTATTTTGTTGATGTTATT
ACAGAAAAATACATTTATGATCTATAGATAATATTCCTTCTATAAAAGGA
GTTACTTGTAGAGCACCCAGTTCATTAGTTGATAATTTTTGGACATGCTC
TGAACTTGGCTCATTTGTATATGATTCTATTGACTGAGTCATTAATTGAA
AAAAAATATGACAGGCAGTGGTGGTGCTCGCCTTTAATCCCAGCACTTGG
GAGACAGAAGCAGGTAGATTTCTGCATTCGAGGCCAGCCTGGTCTATAAG
AGTGAGTTCCAGGAAAAAGTACATGCTTACCATTGTTCAACATAGGGGAA
AAGTGNTCCAGCAATGGATGCAAGTTTCATTTTCTCTAATGAAACGTGAT
CCCCAATAAACCAGAGTTTTTTAAAATCTTTTCTTTTCAGTGTTAAAATA
AAGCTTCCACTAATGGCCCCCCTTTTTAAAAGATTCTAAACCACTTTTTA
AAAAACCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGCACACACACACACACACACACACACACACACACACACACACA
CACACACACACAAACCATCTGGCCCTGGCTTTTTTAAGTTAGGGGAATTT
TAATCATGGCTATATATTTATTTATTTATGGTCATAGGAATATTTAAGTA
GTTTACCTGATCATGATTTAGCTTAGTAAGTGGTATTTGTCTAGAAAATC
ATCTATTTTGTTAAGATTTTTTAATTTTGTAGAGTATAGGCTTTGAAGTA
AGACCTAATGATTCTTTGACTTTCCTCAATGTCTGCTTTTATACGTCCCT
TTACATTTCTTTTTCTTTATTCTGTATTTTTATCTTTTAGTTAATTTGGC
TAAGGGTTTGTCTATATTATTGATTTTTAGAATAAACAATACTTGGGTTT
GTTGATTCTTTGTATTGTTCTCTTTATTTCTAGTTGATTGATCTCAGCAC
TGAATTTGATTGTCTTTTGCCCTCTACCAACTTTTAGAGGGGCTTTTTCC
CTCCTCCTCCTAAAGCTTTCCAGTGGAAGTTTTAAATTTGGAAAATGAGA
ATTCCCAAATTTCTTTCTTGGAGCCCTTATTTATGTGAAGTTTCTGGGTA
AGACGGCTTCCATCTTTCCCCTAATTTAAAGGAATTGGACCTTCTTTTCT
TTGGATTCAAAAAGCTCCTAATTTTCCTTTTTATTTTCTTGACCAGAATC
TTTGGTAAAAGG

Query= MSMg01no365_e13.b1 MSMg01no365_e13.b1 CHROMAT_FILE:
MSMg01no365_e13.b1 PHD_FILE: MSMg01no365_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:44 2005
         (509 letters)



>mm_chr1_102423604_102424513
          Length = 910

 Score =  924 bits (478), Expect = 0.0
 Identities = 502/510 (98%), Gaps = 1/510 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatttaccttttctatttagtattcaacattcactaaatgaatccttgagaggttagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aatatttaccttttctatttagtattcaacattcactaaatgaatccttgagaggttagc 744

                                                                       
Query: 61  ctcatgtttatattttttatactagaaaaaacaaacatattttaatctatttaaatacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 743 ctcatgtttatattttttatactagaaaaaacaaacatattttaatctatttaaatagat 684

                                                                       
Query: 121 caatttgggttcactaaaatgccagagaagtctcaatattcctaaatcatcatctttatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 caatttgggttcactaaaatgccagagaagtctcaatattcctaaatcatcatctttatc 624

                                                                       
Query: 181 atcatctttattatcatcaacatcattactgaagtattattttgttgatgttattacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atcatctttattatcatcaacatcattactgaagtattattttgttgatgttattacaga 564

                                                                       
Query: 241 aaaatacatttatgatctatagataatattccttctataaaaggagttacttgtagagca 300
           ||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaaatacacaaatgatatatagataatattccttctataaaaggagttacttgtagagca 504

                                                                       
Query: 301 cccagttcattagttgataatttttggacatgctctgaacttggctcatttgtatatgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cccagttcattagttgataatttttggacatgctctgaacttggctcatttgtatatgat 444

                                                                       
Query: 361 tctattgactgagtcattaattg-aaaaaaaatatgacaggcagtggtggtgctcgcctt 419
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctattgactgagtcattaattgaaaaaaaaatatgacaggcagtggtggtgctcgcctt 384

                                                                       
Query: 420 taatcccagcacttgggagacagaagcaggtagatttctgcattcgaggccagcctggtc 479
           |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 383 taatcccagcacttgggagacagaggcaggtagatttctgcatttgaggccagcctggtc 324

                                         
Query: 480 tataagagtgagttccaggaaaaagtacat 509
           ||||||||||||||||||||||||||||||
Sbjct: 323 tataagagtgagttccaggaaaaagtacat 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 910
Length adjustment: 10
Effective length of query: 499
Effective length of database: 900
Effective search space:   449100
Effective search space used:   449100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)