BAC Information

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BAC

Clone NameMSMg01-365L01
Chromosome1 (Build37)
Map Location 56,038,090 - 56,038,408
singlet/doubletsinglet
Overlap genenone
Upstream geneSf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365L01.T7 (MSMg01no365_l01.b1)MSMg01-365L01.TJ (MSMg01no365_l01.g1)
ACCAG473585AG473586
length761757
length of high quality
(start - end)
48 (86 - 133)321 (48 - 368)
definitionCHROMAT_FILE: MSMg01no365_l01.b1 PHD_FILE: MSMg01no365_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:15 2005CHROMAT_FILE: MSMg01no365_l01.g1 PHD_FILE: MSMg01no365_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTAATTTTCNNCCTCTTTTCNACTCCCTTTCTNNANAGATCCGCGNAA
TTCNNNATTTCTCGGCTTTCTAANTGNAAACTCANCTTTCTTCCTGCCTG
AAACATGGCTCACTATANGCTACTGACCTCTGGATTTAACCTTTTAATAC
TCTATCCCGTTCCCTTGCGTCGGGCGCTACATGGAGCAAGGTGCTCTGCA
GCTTCCNTTACNNTTNANTCANTCTTATTTTATNTNTAATTTATTTATTT
ATTGTNTATTATATTCTTAATATATTCGCTTNTACTTTAAATTTAAATTG
TNTTATTTAACCTTTTTTTTTNNATTTNNNNTTTTTTATTTTTNTTTTTT
NAATTTTATTGTTTAATTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTT
TTTTTTTTTCTTCTTTTTTTTTTTTTTTTTTTTCCTTTNNTTTTTTTTTT
TTTTTCTCTTTTTTTTTTNNTNNNCCCTCTTTTTCTTTTTTTTTTTTTTT
TTTTTTTCTTCTTTTTTTTTTTTTTNNTTTTTTTCTTTTTTTTTTTTNTT
TTTTTTTTTTTTTTTTCCTTTTTTTTTTTNTTTTTCTTTTTCCTTTTTTC
CTTTTTTTTTNTTTTTTTTTTTTTTTCTTTCCTCCTTTTCCCTTTTTTTT
TTTTCTTTTTTTTTTCCCTTTTTTTTTTTTTTTCCTCTCTTTTTTTTCCC
TTCCCCTCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTG
CCCTGGGTGCAGGATAAGCAGTCCAACCCTGGTACAGGGATGTCCAGTCC
ACTCCTGCTGCATAGACAGCAGTCCATCCCTAGTGGATGAACAAGCATTC
CTGCCCTGGTGCATTAATGAGAGTCCTGGACTAATGCATTGGGGGGGGGG
GGGTCTTCTGTATCTCTGGCACCTTGGATGCTTTGACTTTTGTCTCCTCC
TTTCTTGAGACATAAAGTCATCTAGATGATCACAGAATGGTTGTGTGTCA
CTTAAGAGGAGATGGAGGAGGAGGAGGAAAGTAGGGAACAAAAGTACTAA
GAAAGGAAGGAAGGAAGGTATGAAGGCCTGTCCCCCCCTTTTTATCTTTG
TATGAGCTTTGCACCTTCCTTGATACCATATTTCTCTTCTATGCTATATG
AGAGAGAAGGCATTTGATTTTTTCCCTTTCCTGCTTATGTCTTTTTCCCC
TTTCATTATTTTCATCACTTTTTCAATATTCAGTACATTCTCTTCTTTCT
TTACTTCCACTGTCTAATGATTTCCAGCCCGATCTGTTCTTCTTTTCTTT
TTCTTGCCCTCCTCACCTCCGTTTATTTCTCTTAAGTCTTCTTTTATACT
TCATTTATAGGGTTAGCGATCTTTGATTTTATTTCTCTATTTTTCTTTCC
TTTCATCTCTCTTTTACATTATTATTGTTTTCTCTCTTGTTCATTTTTTT
ATTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_l01.g1 MSMg01no365_l01.g1 CHROMAT_FILE:
MSMg01no365_l01.g1 PHD_FILE: MSMg01no365_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:15 2005
         (321 letters)



>mm_chr1_56037939_56038657
          Length = 719

 Score =  578 bits (299), Expect = e-169
 Identities = 315/321 (98%), Gaps = 2/321 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgccctgggtgcaggataagcagtccaaccctggtacagggatgtccagtccactcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ctgccctgggtgcaggataagcagtccaaccctggtacagggatgtccagtccactcctg 411

                                                                       
Query: 61  ctgcatagacagcagtccatccctagtggatgaacaagcattcctgccctggtgcattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ctgcatagacagcagtccatccctagtggatgaacaagcattcctgccctggtgcattaa 351

                                                                       
Query: 121 tgagagtcctggactaatgcattgggggggggggggtcttctgtatctctggcaccttgg 180
           |||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||
Sbjct: 350 tgagagtcctggactaatgcgtt--gggggggggggtcttctgtatctctggcaccttgg 293

                                                                       
Query: 181 atgctttgacttttgtctcctcctttcttgagacataaagtcatctagatgatcacagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 atgctttgacttttgtctcctcctttcttgagacataaagtcatctagatgatcacagaa 233

                                                                       
Query: 241 tggttgtgtgtcacttaagaggagatggaggaggaggaggaaagtagggaacaaaagtac 300
           |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 232 tggttgtgtgtcacttaagaggaggtggaggaggaggaggaaagcagggaacaaaagtac 173

                                
Query: 301 taagaaaggaaggaaggaagg 321
            ||||||||||||||||||||
Sbjct: 172 aaagaaaggaaggaaggaagg 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 719
Length adjustment: 9
Effective length of query: 312
Effective length of database: 710
Effective search space:   221520
Effective search space used:   221520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)