Query= MSMg01no365_o15.b1 MSMg01no365_o15.b1 CHROMAT_FILE:
MSMg01no365_o15.b1 PHD_FILE: MSMg01no365_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:33 2005
(525 letters)
>mm_chr5_77419094_77420023
Length = 930
Score = 897 bits (464), Expect = 0.0
Identities = 511/528 (96%), Gaps = 7/528 (1%)
Strand = Plus / Plus
Query: 4 ggaattctctgatctacatccagaaaatgcagctgaaatcaagcttaccatggcacaatt 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgatcaacatccagaaaatgcagctgaaatcaagcttaccatggcacaatt 263
Query: 64 gaaaatttcccaaggtattaatatttttgactttaagttctttgttcagtggtaaagttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaaatttcccaaggtattaatatttttgactttaagttctttgttcagtggtaaagttt 323
Query: 124 agctgttgtttgaagcatctttgactgtgatcttcagcagattgagtagaaaggaagctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agctgttgtttgaagcatctttgactgtgatcttcagcagattgagtagaaaggaagctg 383
Query: 184 gccttcccttgagttggtcctgtgttagaacgagtctcaggccttaaaggcccataggag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gccttcccttgagttggtcctgtgttagaacgagtctcaggccttaaaggcccataggag 443
Query: 244 caggagcttcgtttgatgcacagcactgccctgccttttctaggatgtctcacgtagaga 303
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 444 caggagcttcgtttgatgcacagcactgccctgccttttctgggatgtctcacgtaggga 503
Query: 304 tgcctggctctgagactgtacaaagtgagaaacaggttcctttgccttggacgctgcagt 363
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
Sbjct: 504 tgcctggctctgagactgtacaaagtgaggaacaggttcctttgccttgcacgctgcact 563
Query: 364 gtcttagcttgttccttttttcttgtt---tttttttatactttgctatgtacagaaatt 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 564 gtcttagcttgttccttttttcttgttgtttttttttatactttgctatgtacagaaatt 623
Query: 421 atgaggtctgatacatttgataggcaacagaaaacct-cgttt-tttttttaa-ttaagc 477
||||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||||
Sbjct: 624 atgaggtctgatacatttgataggcaacagaaaac-tacgtttgtttttttaaattaagc 682
Query: 478 ttgattatctagaattgggttgtccagtgtgctatttgctatcttcgt 525
|||||||||||| |||| |||||||||||||||| ||||||||||||
Sbjct: 683 ttgattatctaggattgagttgtccagtgtgctagctgctatcttcgt 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 930
Length adjustment: 10
Effective length of query: 515
Effective length of database: 920
Effective search space: 473800
Effective search space used: 473800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_o15.g1 MSMg01no365_o15.g1 CHROMAT_FILE:
MSMg01no365_o15.g1 PHD_FILE: MSMg01no365_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:33 2005
(518 letters)
>mm_chr1_19749202_19750119
Length = 918
Score = 963 bits (498), Expect = 0.0
Identities = 513/518 (99%)
Strand = Plus / Minus
Query: 1 tcctacctcacctcgaatccagagaacctgtttattcttggtggtttcatctgtacagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 718 tcctacctcacctcgaatccagagaacctgtttattcttggtggtttcacctgtacagcc 659
Query: 61 ttcatagcctctgaatattttaaactcttcctgttagagcatctgcatgtgtgtatacat 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttcatagcctctgaatcttttaaactcttcctgttagagcatctgcatgtgtgtatacat 599
Query: 121 gaatggggaagagagaaggcaatttgattccataaaagttctgtatcatgtagtgtttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gaatggggaagagagaaggcaatttgattccataaaagttctgtatcatgtagtgtttca 539
Query: 181 ttgctttcaaatacccattggcttaatttcactaaacattgtttacctcctaagaagagc 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttgctttcaaatacccattgacttaatttcactaaacattgtttacctcctaagaagagc 479
Query: 241 cactcctgggctcatggtaaccaacagagagtgcacaataattaacactagtcattattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 478 cactcctgggctcatggtaaccaacagagagtgcacaataattaacactagacattattt 419
Query: 301 ccaatctcatttgtgtagtaattttcatatgtagattatgattatgtattgatatgaaaa 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 418 ccaatctcatttgtgtagtaattttcatatgtagattatgattacgtattgatatgaaaa 359
Query: 361 tatggagaaaatgtagacttctgaatgagtaatgttaaactataagaaatagcaaattta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tatggagaaaatgtagacttctgaatgagtaatgttaaactataagaaatagcaaattta 299
Query: 421 agatgtcaatctgtaacctttacaaacctttgtttgttgttatactattacagtctagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agatgtcaatctgtaacctttacaaacctttgtttgttgttatactattacagtctagaa 239
Query: 481 cttacttttaatttttttctgactctaaaacatggaga 518
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cttacttttaatttttttctgactctaaaacatggaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
