Query= MSMg01no365_p14.b1 MSMg01no365_p14.b1 CHROMAT_FILE:
MSMg01no365_p14.b1 PHD_FILE: MSMg01no365_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:39 2005
(431 letters)
>mm_chr1_147284512_147285342
Length = 831
Score = 803 bits (415), Expect = 0.0
Identities = 427/431 (99%)
Strand = Plus / Plus
Query: 1 tgaatgcataaaatttgcagatacatgcatggagctagaaagtagattgagaaagatacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaatgcataaaatttgcagatacatgcatggagctagaaagtagattgagaaagatacc 260
Query: 61 ctgactcagaaagacaaatgctgcatgttctcatatttgtgtacctcagcttatcaaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgactcagaaagacaaatgctgcatgttctcatatttgtgtacctcagcttatcaaagt 320
Query: 121 caagcttagttttcaaaaattaatctcaagtatccaaagaagttaggcaaatagaaagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagcttagttttcaaaaattaatctcaagtatccaaagaagttaggcaaatagaaagta 380
Query: 181 agcacaggtgtagggagggagaaggagtactacagagaaaaacaggaagggaaataagac 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 agcacaggtgtagggagggagaaggagtactacagagaaaaataggaagggaaataagac 440
Query: 241 ttaactttatgcttggggcagaaggataacagaaaagaggaaggagagctaaataataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaactttatgcttggggcagaaggataacagaaaagaggaaggagagctaaataataaa 500
Query: 301 gaatatttgaaaaagccacgagaaaacattattttacaagcttactttaaaactgtattt 360
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gaatatttgaaaaagccatgagaaaacattattttacaagcttagtttaaaactgtattt 560
Query: 361 tatgtatgtgtgttttacagtttttcaaagagagttacgccacatgtgatgatggcccca 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 tatgtatgtgtgttttacagtttttcaaagagagttacgccacacgtgatgatggcccca 620
Query: 421 cccttcaaggt 431
|||||||||||
Sbjct: 621 cccttcaaggt 631
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space: 346884
Effective search space used: 346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_p14.g1 MSMg01no365_p14.g1 CHROMAT_FILE:
MSMg01no365_p14.g1 PHD_FILE: MSMg01no365_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:39 2005
(493 letters)
>mm_chr1_147475841_147476731
Length = 891
Score = 789 bits (408), Expect = 0.0
Identities = 472/494 (95%), Gaps = 4/494 (0%)
Strand = Plus / Minus
Query: 1 ctagaacagaaggtttctttaaaaattaacttcactagatttattgatttgggaaaattc 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 691 ctagaacagaaggtttctttaaaaattaacttcactggatttattgatttgggaaaattc 632
Query: 61 acttctaaaaatctgatcatcagagtattaaattggagcaattcatgaaatagtctataa 120
|||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct: 631 acttctaaaaatctgatcatcagaatattaaattggagcaattcatgaaat--tttataa 574
Query: 121 tccatgttttattaccctataatttgtctctgctgccatggcattgtatttgcatataga 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 573 tccatgttttattaccctataatttttctctgctgccatggcattgtatttgcatataga 514
Query: 181 acctgaacacaaagttatctatgatccaaatactcttgagggatggcaatagtaacgtag 240
||||||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 513 acctgaacacaaaataatctatgatccaaatactcttgagggatggcaattgtaatgtag 454
Query: 241 taactcttgaagattcctgcaaaattcagtcatgtcgatgctgtagcaggaatgaagaat 300
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 453 taactcttgaagattcctgcaaaattcagccatgtctatgctgtagcaggaatgaagaat 394
Query: 301 gattttcttttagtgaacagtgctgtggagtgaatgaaattattaaagagtttttaatgc 360
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aattttcttttagtgaacagtactgtggagtgaatgaaattattaaagagtttttaatgc 334
Query: 361 ttatgtgataactaaaatttatgtccaaattcatcctttatcttttt-attatacatata 419
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 333 ttatgtgataactaaaatttatatccaaattcatcctttatcttttttattatacatata 274
Query: 420 tcttccagtttcccccaatactatttctggactgttgaaaatcgacccatggttcacatg 479
||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||
Sbjct: 273 tcttccagtttcccc-aatactatttctggactgttgaaaattgacccgcggctcacatg 215
Query: 480 aactgggtttcacc 493
||||| ||||||||
Sbjct: 214 aactgtgtttcacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 891
Length adjustment: 10
Effective length of query: 483
Effective length of database: 881
Effective search space: 425523
Effective search space used: 425523
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
