BAC Information

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BAC

Clone NameMSMg01-366A20
Chromosome1 (Build37)
Map Location 142,737,083 - 142,737,567
singlet/doubletsinglet
Overlap genenone
Upstream geneBC026782, LOC545399, EG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366A20.T7 (MSMg01no366_a20.b1)MSMg01-366A20.TJ (MSMg01no366_a20.g1)
ACCAG473861AG473862
length775765
length of high quality
(start - end)		489 (52 - 540)435 (80 - 514)
definitionCHROMAT_FILE: MSMg01no366_a20.b1 PHD_FILE: MSMg01no366_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:46 2005CHROMAT_FILE: MSMg01no366_a20.g1 PHD_FILE: MSMg01no366_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTACCCTCTGCCTCTACTAAAATGCTAGGGATACCAGT
GTGAGCCACCATCAGTTTTATGCTACCTGGAAATTTATACATGTTAGAAA
ATTACACTGTGAACTGAGCCGCAGGTTTACCTCTGGTGACTAATTTCTAA
ATAAAATACTGACTTACAATAATCAGATTGATTAAACTTTAAAAATTATT
TCATCATAGTTTATTACAAAAATACTACTCTTGAGATAAGATTAGTAGAG
TAGCTTAAAAACAACTGCAAAGAGGAAGGAGGAAAGGTCTTGTCTTGGTC
AGATAATGAGTAAAAAGATGATAAATGACAGCCTACTTTCAACTATTTGA
TTATTACAGGCCATGTGGATGACAAATACATGAATATTTGCCTTTCTCTC
TTTTATTTGGAACTTCTAGGAAAGTTGTTCAGGTATAAATTATGACGGAA
TAGTTCAGGTGACCTCTACTTGCATTGAGGTATCTTGCATGATACTTATG
AATTCCTGATATAAGTCACATTGCTGATGGAAATTTGTGCCCACATCAAA
AGGGCCTCGAAAACTTATTGGTGGGATTTGGCAAGAATCCCAAAGGGACC
AATTAAGCCATTTTATTCTTTATGCCCATCTTGCCAAAACCCTTTTTCTT
TTGATTAAAAAATTAAAATGGCCTCCTCCCACCTAAAANCAGAACCCCGA
AAAATTATTGGTGGAACCCAATGGA

NNNNCCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCTGTTGTTATGTC
TCCCTTTTCATTTCTGATTTTGTTAATTAGGATGTTGTTCCTGTGCCCTC
TAGTGAGTCTAGCTAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAAC
CAACTCCTCGTTTGGTTAATTCTTTGAATAGTTCTTCTTGTTTCCACTTG
GTTGATTTCACCCCTGAGTTTGATTATTTCCTGCCGTCTACTCCTCTTGG
GTGAATTTGCTTCCTTTTTTTCTAGAGCTTTTAGATGTGTTGTCAAGCTG
CTAGTATGTGCTCTCTCCCGTTTCTTCTTGGAGGCACTCAGAGCTATGAG
TTTCCCTCTTAGAAATGCTTTCATTGTGTCCCATAGGTTTGGGTATGTTG
TGGCTTCATTTTCATTAAACTCTAAAAAGTCTTTAATTTCTTTCTTTATT
CCTTCCTTGACCAAGGNATCATTGAGAAGAGTGTTGTTCAGTTTCCACGT
GAATGTTGGCTTTCCCTTTATTTATGTTGTTAATGAGGATCAGCCTTAAG
GCCTGTGTGGTTTGAATGAAACTTGTTTTATATTCACATTTTTGGTTCTG
GTGAGGCCCCGTTTTTTTTTAACTTTATTGCGCTTTTTTTGTAAAGCCTC
GGTGTGTGCTTACAAAAAAATTTCCCCTTTTTTTTTAAATAAACGCTTTT
CTTACACCTGCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_a20.b1 MSMg01no366_a20.b1 CHROMAT_FILE:
MSMg01no366_a20.b1 PHD_FILE: MSMg01no366_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:46 2005
         (489 letters)



>mm_chr1_142736879_142737767
          Length = 889

 Score =  915 bits (473), Expect = 0.0
 Identities = 482/485 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttaccctctgcctctactaaaatgctagggataccagtgtgagccaccatcag 64
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattccttaccctctgcctctactaaaatgctagggataacagtgtgagccaccatcag 264

                                                                       
Query: 65  ttttatgctacctggaaatttatacatgttagaaaattacactgtgaactgagccgcagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttatgctacctggaaatttatacatgttagaaaattacactgtgaactgagccgcagg 324

                                                                       
Query: 125 tttacctctggtgactaatttctaaataaaatactgacttacaataatcagattgattaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttacctctggtgactaatttctaaataaaatactgacttacaataatcagattgattaa 384

                                                                       
Query: 185 actttaaaaattatttcatcatagtttattacaaaaatactactcttgagataagattag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actttaaaaattatttcatcatagtttattacaaaaatactactcttgagataagattag 444

                                                                       
Query: 245 tagagtagcttaaaaacaactgcaaagaggaaggaggaaaggtcttgtcttggtcagata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagagtagcttaaaaacaactgcaaagaggaaggaggaaaggtcttgtcttggtcagata 504

                                                                       
Query: 305 atgagtaaaaagatgataaatgacagcctactttcaactatttgattattacaggccatg 364
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgagtaaaaggatgataaatgacagcctactttcaactatttgattattacaggccatg 564

                                                                       
Query: 365 tggatgacaaatacatgaatatttgcctttctctcttttatttggaacttctaggaaagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggatgacaaatacatgaatatttgcctttctctcttttatttggaacttctaggaaagt 624

                                                                       
Query: 425 tgttcaggtataaattatgacggaatagttcaggtgacctctacttgcattgaggtatct 484
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 625 tgttcaggtataaattatgacggaatagttcaggtgacctctacttgctttgaggtatct 684

                
Query: 485 tgcat 489
           |||||
Sbjct: 685 tgcat 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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