BAC Information

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BAC

Clone NameMSMg01-366D15
Chromosome1 (Build37)
Map Location 52,337,035 - 52,503,518
singlet/doubletdoublet
Overlap geneLOC546735
Upstream geneSdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls
Downstream geneNab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366D15.T7 (MSMg01no366_d15.b1)MSMg01-366D15.TJ (MSMg01no366_d15.g1)
ACCAG473991AG473992
length760774
length of high quality
(start - end)		498 (49 - 546)106 (261 - 366)
definitionCHROMAT_FILE: MSMg01no366_d15.b1 PHD_FILE: MSMg01no366_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:00 2005CHROMAT_FILE: MSMg01no366_d15.g1 PHD_FILE: MSMg01no366_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,503,026 - 52,503,518)(52,337,035 - 52,337,140)
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAAATCC
GCGGAATTCAGGGTACTTACAAACCTTATTTCCCCCATCACAACCAGCAT
CTCAAAGAGTAGAAGGAAAATCCACAGAATGACAGATTTGCGATTGGGCA
ACCACTAAACTTCATAACTGAACAGATTCATGTAAAAGAAAACTGGTTTT
GTTTCAGTAAAATGACTTTTAAATTTCAAAATACTAGTGATTCTTGATCC
AAGTCCCAGGCCACCCTAGTAGACATCTGGATGTTTGTAAGACATCTGGA
TGTTTGTGAGAACCTTGTTTCTTTTATTTGAAGCTTCTACCGTTGATTAT
CTATAGTTGTCATGATTTCAAAATCAAGTCATGGCTGAGTAGACAAGTGC
AATGTCTATAATTCCAGCACTTGGAAGGTACAGACAGGGGGATCACAAGT
TCAAGGCCAGCCTCTACTATATGACAAATTTAAAGCCAGCCAAAATATTC
ATCTTTATCTCTAAGAATGATGAATTTTTATGAGTTTAATTCTATGAAAC
TAAGCTTGCCACCTCTGCCTGTACCTTCTGCTACCAAGAGCAATTCTGCA
CTTGACCAGACAGAGTTATGTATGCATCCAACCTCCAGTCAGGAAGAAAA
TGACCATGGGAAAACAAACCCTCTAAATTTTCAGATTGTACAACCTATAA
TCACAATCATGAATTTTGGCCAGGGAATTGACTTTAAACTTAATTTAAAC
AGGGAAACCT

NNNNAACGATCCTCCGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACGTGGGAAAATACCACAC
TAGGAGTCAAAACAATTGTCAGCCACTAACAATCCAGCTCAAAGTGGTCA
AACAAATTTTCTAGAGACAAAACATGGTGCCATGGTCACTAGGGAGGACT
AGGAGGGACTGAGGCCCACGAAATAGCATGTCAGGATGCCCTGACGGGAA
GCTGTACATAGGGAGAGAGCCTCGTAAACAAATGAGATTAAGGAAATCTG
GAAATTACAGAAAAGAGAAGAGGATGCCCGGCTCTGTACGAAGACAAGAA
GCTATGACAGGTTGGTGGCAAATCCTGTCTGCTTTTCTAGTTTTCCTGAG
GATGAGCTCAGCTAAGAGAGCTAAACATTGCCTCTGCTGGCACAGGAGCA
GCAGGATTCTGCTTCTGCCAGGAGGCGGAGGAGGTGTCCCGTGAGTTGAT
GAATACCCCTTACAACAAACCTCCAGGCTATTCTTTGTATGACTGCTTTT
CACAACCTTCTATGAGCAGCACTACACTCTTGTCCCCTCTTCTTGCCCAG
GATGAGAACTTTTAGGATCAGGTGAGAGGGACTCCTAGTCCTCCCCNAAA
GGCCCTTAATTTTACAAAAGGTTTTTTTGAGTTCTAATTCAACCCTTGGA
TTCTATTAAAGCTAAGCCTCCTTGTTCCCCAAAGGGGGGGGGCAACCAAA
AAGGTTTTCTGGTCCTCCCCACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_d15.b1 MSMg01no366_d15.b1 CHROMAT_FILE:
MSMg01no366_d15.b1 PHD_FILE: MSMg01no366_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:00 2005
         (498 letters)



>mm_chr1_52502966_52503863
          Length = 898

 Score =  907 bits (469), Expect = 0.0
 Identities = 487/493 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcagggtacttacaaaccttatttcccccatcacaaccagcatctcaaagagtaga 65
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gaattcagggtacctagaaaccttatttcccccatcacaaccagcatctcaaagagtaga 494

                                                                       
Query: 66  aggaaaatccacagaatgacagatttgcgattgggcaaccactaaacttcataactgaac 125
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 493 aggaaaatccacagaatgacagatttgcgattgggcaaccactaaacttcataactgagc 434

                                                                       
Query: 126 agattcatgtaaaagaaaactggttttgtttcagtaaaatgacttttaaatttcaaaata 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agattcatgtaaaagaaaactggttttgtttcagtaaaatgacttttaaatttcaaaata 374

                                                                       
Query: 186 ctagtgattcttgatccaagtcccaggccaccctagtagacatctggatgtttgtaagac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctagtgattcttgatccaagtcccaggccaccctagtagacatctggatgtttgtaagac 314

                                                                       
Query: 246 atctggatgtttgtgagaaccttgtttcttttatttgaagcttctaccgttgattatcta 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atctggatgtttgtgagaaccttgtttcttttatttgaagcttctaccgttgattatcta 254

                                                                       
Query: 306 tagttgtcatgatttcaaaatcaagtcatggctgagtagacaagtgcaatgtctataatt 365
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tagttgtcatggtttcaaaatcaagtcatggctgagtagacaagtgcaatgtctataatt 194

                                                                       
Query: 366 ccagcacttggaaggtacagacagggggatcacaagttcaaggccagcctctactatatg 425
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ccagcacttggaaggtaaagacagggggatcacaagttcaaggccagcctctactatatg 134

                                                                       
Query: 426 acaaatttaaagccagccaaaatattcatctttatctctaagaatgatgaatttttatga 485
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 133 acaaatttaaagccagccaaaatattcaactttatctctaagaatgatgaatttttatga 74

                        
Query: 486 gtttaattctatg 498
           |||||||||||||
Sbjct: 73  gtttaattctatg 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_d15.g1 MSMg01no366_d15.g1 CHROMAT_FILE:
MSMg01no366_d15.g1 PHD_FILE: MSMg01no366_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:00 2005
         (106 letters)



>mm_chr1_52336835_52337340
          Length = 506

 Score =  159 bits (82), Expect = 6e-44
 Identities = 100/106 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggagagagcctcgtaaacaaatgagattaaggaaatctggaaattacagaaaagagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 gggagagagcctcgtaaacaaatgagattaaggaaatctggaaattagagaaaagagaag 260

                                                         
Query: 61  aggatgcccggctctgtacgaagacaagaagctatgacaggttggt 106
           ||||||||||| ||||||| ||||| |||| |||| ||||||||||
Sbjct: 261 aggatgcccgggtctgtacaaagacgagaaactataacaggttggt 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)


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